Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02425 ATGGGTTGTGAGTTTTCTAAGTTCCCAGCATGCTGCACGGGTACTGAGCAAGATGGTCCAGCTCCTGAGGTTCAGGTTGATTGCGCAAACGAAGAAAATGTTGTTGAGGCCATTGATTTGCCGAGGTTTCATGAATTCTCAATTGATCAGCTTAGGAGGGCTACATCCGGATTTGCTGTTGAAAATATAGTTTCTGAGCATGGAGAAAAGGCTCCAAATGTGGTCTATAAAGGGAAACTTGATAATCAGATGCGAATTGCTGTCAAACGGTTCAACAGAAATGCCTGGCCGGATGCGCAGCCATTTTTGgaggaggccagggctgttggtcagctaaggaaccaaagattggtaaatctgcttggatgttgctgtgatggcgatgagaggttacttgttgctgaatatatgcccaaTGAGACTTTGGCAAAACATTTATTCCATTGGGAAAATCAGCCTATGAAATGGGCAATGCGAATGAGAGTTGCTCTATGCATTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGGCGTGCACTATATCATGATCTTCATGCTTACCGAGTTCTTTTTGATGCTGACTACAATCCTAGGCTTTCATGCTTCGGTCTGATGAAAAATAGTCGAGATGGGAAAAGTTATAGTACGAATTTAGCGTTTACTCCACCTGAATATCTGAGGACAGGCAGAGTTACTCCAGAGAGTGTTACTTATAGCTTTGGTACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATGCCCTTGACCTGATTAGAGACAAAAACCTTCAAATGCTATCAGACTCTTGTTTGGAAGGAGAGCTTTCAAATGATGATGGAACTGAATTAGTGCGTCTAGCCTCGCGATGCTTGCAATCTGAACCACGAGAGCGTCCTAATCCAAGATCACTGGTTGCTGCTCTAATACCTCTTCAGAAGGATTCTGAGGTTTCTTCTCATGTGCTGATGGGTATACCCGATGGTACAGCTGCTTTTCCCCTTTCACCTCTTGGAGAAGCTTGTCTGCGAATGGATCTGACTGCCCTGCATGAGGTGCTGGAGAAAATTGGGTATAAAGACGATGAGGGAGCAGCAACTGAGCTTTCATTCCAAATGTGGACAAACCAGATGCAGGAAACATTGAACTCAAAGAAGAAAGGCGATTCTGCTTTTCGGCATAAGGATTTTACAACTGCAATCGATAGCTATACGATGTTCATTGATGTTGGAACGATGGTTTCTCCAACTGTTTATGCACGTCGTAGTCTATGTTATCTGATGAACAATATGGCGGATGAAGCGCTAAATGATGCAATGCAAGCACAAGTAATATCCCCCGTTTGGTACATTGCTTTTTATTTACAAGCTGTTGCTCTTTTAGCACAGGGCAAGGAGAATGAGGCCCAAGTAGCACTTAAAGAGGGTTCTTCTCTTGAAACTAAAAAGAGTTGA 1464 0.403 MGCEFSKFPACCTGTEQDGPAPEVQVDCANEENVVEAIDLPRFHEFSIDQLRRATSGFAVENIVSEHGEKAPNVVYKGKLDNQMRIAVKRFNRNAWPDAQPFLEEARAVGQLRNQRLVNLLGCCCDGDERLLVAEYMPNETLAKHLFHWENQPMKWAMRMRVALCIAQALEYCTSKGRALYHDLHAYRVLFDADYNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDKNLQMLSDSCLEGELSNDDGTELVRLASRCLQSEPRERPNPRSLVAALIPLQKDSEVSSHVLMGIPDGTAAFPLSPLGEACLRMDLTALHEVLEKIGYKDDEGAATELSFQMWTNQMQETLNSKKKGDSAFRHKDFTTAIDSYTMFIDVGTMVSPTVYARRSLCYLMNNMADEALNDAMQAQVISPVWYIAFYLQAVALLAQGKENEAQVALKEGSSLETKKS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02425 487 Gene3D Tetratricopeptide repeat domain 371 483 IPR011990 GO:0005515
Cca09g02425 487 Gene3D Transferase(Phosphotransferase) domain 1 138 330 - -
Cca09g02425 487 SUPERFAMILY TPR-like 388 482 IPR011990 GO:0005515
Cca09g02425 487 Pfam Protein tyrosine and serine/threonine kinase 74 311 IPR001245 GO:0004672|GO:0006468
Cca09g02425 487 PANTHER TPR DOMAIN KINASE 1 487 - -
Cca09g02425 487 SUPERFAMILY Protein kinase-like (PK-like) 41 318 IPR011009 -
Cca09g02425 487 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 487 IPR045845 GO:0004672|GO:0009742
Cca09g02425 487 ProSiteProfiles Protein kinase domain profile. 61 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02425 487 Gene3D Phosphorylase Kinase; domain 1 33 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02425 Cca-Chr9 49607146 49618307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02425 46 337 Glycoside Hydrolase AT3G07070 34.062 2.31e-42 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Cca09g02425 PK_Tyr_Ser-Thr 4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02425 K14500 - gmx:100819210 917.146