Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02424 ATGGATGGGAGAGAAGCTATGGCATTCTCTGGAGGCTCAGCTCCATATTACATGCATAGAGGAGGAGGGGTTGGTTCTGAAACACAGAGTGGGTTCCAAGCAGCCCCTGGGTTCAGGCCTTTGCCAAACACTGGCATCAAAGCTGAGTCAAATGCAAGGGGTGGTTCTGTAGGGTCTGGTTCCACATTTTCAGTGGAGCCTCCTCAGGCTCGTGTCAATTTTAACCATGGCATTGGCATTGGGGCACCTTCAAGTGAGCCTGTGAAGAAGAAAAGAGGGAGGCCCCGTAAATATGGGCCGGATGGGCCGGTTTCTTTGAGACTGTCTCCAATGTCTGCCCCTGCTAACTCCACCCAGGGTGAAAGTGCAGCCACCCCTTCTCAGAAAAAGGGTAGAGGGCGACCACCTGGATCTGGAAGGAAGCAACAGCTGGCTGCTTTAGGTCTGTTTGTTTTAGGATCTTCATTTATTGTTTATTCAGGGTTGGCCTTTTCGCCTCATGTTGTCACTATTGGAGTTGGGGAGGACATTGTGGCAAAGTTATTGTCGTTATCACAGCAGAGGCCAAGGGCTCTGTGCATATTGTCAGGCACCGGGACAGTTTCCTCAGTCACTCTGCGACAGCCTGCTTCTACTAATGCCAGTGTAACTTTTGAGGGACGATTCCAAATATTATGCTTGTCTGGTTCTTATTTGGTTGCTGAAGAAGGTGGACCCTCCAATAGAACTGGTGGCATTAGTGTTTCACTTTCTAGCCCTGATGGTCATGTTATTGGTGGTGGTGTCGCTGTGCTTATTGCTGCAAGCCCAGTGCAGGTGGTATTGTGCAGTTTTGTGTATGGTAGCTCAAGGACCAAGTCTAAACAAGCGACCGCCACAAGAAATGAAAGTTCTGAGCCGCCACAGCAGAATGATAAGTTAGCTTCTCCTGCCAGTGCTCCTGCTCCACCTGCTCAAAACTACCTCCCTCCTGCAACAAACATTTGGCCTGGATCACGATCGACAGAGCTGAAAAGTGCGCACACTCATACCGGCATTGACTTGACTCGCGGGTTTGCACTAACACATGCTGAAACAATTGTGAATTATTTGGGCTTATGTGACGATTCTTGA 1113 0.4933 MDGREAMAFSGGSAPYYMHRGGGVGSETQSGFQAAPGFRPLPNTGIKAESNARGGSVGSGSTFSVEPPQARVNFNHGIGIGAPSSEPVKKKRGRPRKYGPDGPVSLRLSPMSAPANSTQGESAATPSQKKGRGRPPGSGRKQQLAALGLFVLGSSFIVYSGLAFSPHVVTIGVGEDIVAKLLSLSQQRPRALCILSGTGTVSSVTLRQPASTNASVTFEGRFQILCLSGSYLVAEEGGPSNRTGGISVSLSSPDGHVIGGGVAVLIAASPVQVVLCSFVYGSSRTKSKQATATRNESSEPPQQNDKLASPASAPAPPAQNYLPPATNIWPGSRSTELKSAHTHTGIDLTRGFALTHAETIVNYLGLCDDS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02424 370 SUPERFAMILY AF0104/ALDC/Ptd012-like 164 281 - -
Cca09g02424 370 MobiDBLite consensus disorder prediction 287 309 - -
Cca09g02424 370 MobiDBLite consensus disorder prediction 54 69 - -
Cca09g02424 370 MobiDBLite consensus disorder prediction 287 336 - -
Cca09g02424 370 CDD DUF296 166 278 IPR005175 -
Cca09g02424 370 ProSiteProfiles PPC domain profile profile. 161 299 IPR005175 -
Cca09g02424 370 MobiDBLite consensus disorder prediction 110 126 - -
Cca09g02424 370 Gene3D - 166 296 - -
Cca09g02424 370 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 351 IPR039605 GO:0003680
Cca09g02424 370 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 351 - -
Cca09g02424 370 MobiDBLite consensus disorder prediction 1 140 - -
Cca09g02424 370 Pfam Plants and Prokaryotes Conserved (PCC) domain 166 279 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02424 Cca-Chr9 49596444 49599757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02424 1 351 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.329 2.42e-91 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02424 - - gmx:100798706 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01796 06 33302480 33306813 Cca09g02424 09 49596444 49599757 PCT