Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02419 ATGGCGACCAAGTTTTTAGCGTTAGCATGTTTACGTAACAGTGAGGGGCCGAGACCTCACTACCCGTCCATGCCTCGATACCCAAAGGGCGTGACGGAAGAAGAAGGAAGCAGCAACGTATCGTCCAAAGCACTTTTCTCGGTCACCGGAATGACTTGCTCCGCCTGTGCCGCCTCCGTCGAGAAAGCCGTCAAGCGCCTTCCCGGAATCCGCCAAGCCGTCGTTGATGTTCTCAACAACCGTGCACAAGTTCTCTTCTACCCTTCCTTTGTTAATGAAGAGAGCATTCGCGAAGCCATTGAAGACGCGGGATTCGAAGCCACATTAATGAAAGATGATAACGAGACATCTGTTCAGGTATGCCGCATACGTATCCAAGGCATGACGTGCACGTCGTGTTCCTCCACCGTTGAATCCGCTCTACAATCAATCCAAGGAGTGCTGAAAGCCCAAGTGGCTCTCGCAACTGAGGAAGCAGAAGTTCACTACACTCCCAACGTTGTCACCTACAACCAAATCTTGGAAGCTGTAGAACACACGGGCTTCCAAGCCACACTTATAAGCACAAGTGAAGACATGAACAGAATAGACCTTCAAGTTGAGGGCATAAGAACAGGTCGTTCCATGAGGCTCATTGAAAACTCTCTTCAGGCTCTCCCTGGTGTCCAAGGTGTAGAAACACACCCTGAGTTGAACAAAGTGTCTCTTTCTTATAAACCAGACTTAACAGGCCCCAGAAATTTCATTAACGTGATTCAAGAAACCGGGTCGAGGCGTTTCAAGGCTAAGATTTTCCCTGAAGAAGGAGGTGGAAGGAATAATCATAGGAAGGAGGAAATCAAGCAGTACTACAGATCATTCTTGTGGAGTTTGGTTTTCACTATTCCTGTGTTTCTAACCTCTATGGTGTTTATGTATATCCCTGGAATTAAGCATGGGCTAGATAACAAAGTTGTGAACATGCTTACTATTGGGGAGGTTATAAGATGGGTGCTTGCCACCCCAGTGCAGTTCATTATAGGGAAGAGGTTTTACTCTGGTGCTTACAAAGCATTACGCCTTGGATCTCCCAACATGGATGTTTTGATTGCCTTGGGGACAAATGCAGCATATTTTTACTCGGTGTATTCTGTGCTGAGAGCTGCTACATCTCATAGTTTTGAGGGTACTGATTTCTTTGAGACTAGTGCTATGCTTATTTCGTTTATTTTGCTAGGGAAGTACCTTGAGGTTTTGGCCAAGGGGAAGACGTCCAATGCAATTGCCAAGCTCATGAACTTGACACCTGACACGGCTATATTGTTGAGCCTGGACAGTGAAGGAAATGTTGTTGGTGAGGAGGAAATTGATAGCAGGTTGATTCAGAAGAATGATGTGATTAAAATTATTCCTGGTGCGAAAGTGGCTTCGGATGGCTTCGTTATTTGGGGTCAGAGTCATGTGAATGAGAGCATGATAACAGGTGAGGCACGTCCTGTGGCTAAGAGGAAAGGAGACACTGTTATTGGAGGAACTTTGAATGAGAATGGAGTGTTGCATGTTAAGGCTACATGGGTTGGATCAGAGAGTGCTCTTTCTCAGATTGTTCGACTTGTTGAGTCAGCACAGTTGGCCAAGGCTCCAGTGCAGAAGTTTGCTGACCGTATTTCCAAATACTTTGTGCCTCTGGTTATTTTAATCTCATTTTCAACTTGGCTTGCATGGTTTTTAGCTGGAAGATTTCATGCTTACCCCAAGTCTTGGATACCATCTTCCATGGATAGCTTTGAGCTTGCTTTGCAGTTTGGGATTTCTGTCATGGTCATAGCCTGTCCGTGTGCTTTAGGTTTAGCAACACCAACTGCTGTTATGGTTGGCACCGGAGTAGGTGCATCTCAGGGAATACTTATCAAAGGAGGTCAAGCATTAGAAAATGCACATAAGGTGAACTGCATTGTGTTTGACAAGACAGGTACTCTCACTATCGGGAAGCCTGTGGTAGTAAATACAAAATTGTTGACAAATATGGTACTGCGGGAATTCTATGAACTTGTGGCTGCAACTGAGGTGAATAGTGAGCATCCACTGGCTAAGGCTATTGTTGAATATGCCAAAAAACTGAGAGATGAAGAGAACCCCATTTGGCCAGAGGCACGGGATTTTGTGTCCATTGCTGGACACGGAGTTAAGGCCATGGTTAGAAACAAGGAAATACTTGTGGGTAACAAGACCTTGTTGGCCGACCACGATGTTGCACTTCCTATTGATGCTGAAGAGATGCTTGCGGAAGCGGAAGCAATGGCTCAAACTGGAATTATAGTGTCTATAAATAGGGAAGTAGTTGGGGTTTTAGCAGTGTCTGATCCATTGAAACCAGCGGCTCAAGAAGTCATTTCCATTCTCAAGTCTATGAAAATTAGGAGCATCATGGTGACTGGGGACAACTGGGGTACTGCCAAATCTATAGCAAGGGAAGTTGGAATTGAAACTGTTATTGCTGAGGCCAAACCAGAGCAGAAGGCAGAGCAAGTGAAGGACTTGCAGGCATCAGGGTACAAGGTGGCAATGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCAGGTACAGACATTGCCATTGAGGCTGCTGATATTGTCCTGATGAAGAGCAACTTGGAGGATGTCATAACTGCCATTGATCTGTCCAGAAAGACGTTTTCCCGTATCCGCCTCAACTACATATGGGCTTTGGGCTATAATCTTTTTGGCATTCCAATTGCTGCTGGAGCTCTTTTTCCTTCAACAGGATTCCGGTTGCCACCATGGGTTGCAGGGGCTGCCATGGCTGCCTCTTCTGTCAGTGTTGTCTGCTGTTCTCTATTGTTGAAATATTATAGGAGACCCAAGAAACTGGACAGCCTCGAGATAAGGGGCATAAGCATTGAGTGA 2940 0.4585 MATKFLALACLRNSEGPRPHYPSMPRYPKGVTEEEGSSNVSSKALFSVTGMTCSACAASVEKAVKRLPGIRQAVVDVLNNRAQVLFYPSFVNEESIREAIEDAGFEATLMKDDNETSVQVCRIRIQGMTCTSCSSTVESALQSIQGVLKAQVALATEEAEVHYTPNVVTYNQILEAVEHTGFQATLISTSEDMNRIDLQVEGIRTGRSMRLIENSLQALPGVQGVETHPELNKVSLSYKPDLTGPRNFINVIQETGSRRFKAKIFPEEGGGRNNHRKEEIKQYYRSFLWSLVFTIPVFLTSMVFMYIPGIKHGLDNKVVNMLTIGEVIRWVLATPVQFIIGKRFYSGAYKALRLGSPNMDVLIALGTNAAYFYSVYSVLRAATSHSFEGTDFFETSAMLISFILLGKYLEVLAKGKTSNAIAKLMNLTPDTAILLSLDSEGNVVGEEEIDSRLIQKNDVIKIIPGAKVASDGFVIWGQSHVNESMITGEARPVAKRKGDTVIGGTLNENGVLHVKATWVGSESALSQIVRLVESAQLAKAPVQKFADRISKYFVPLVILISFSTWLAWFLAGRFHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGILIKGGQALENAHKVNCIVFDKTGTLTIGKPVVVNTKLLTNMVLREFYELVAATEVNSEHPLAKAIVEYAKKLRDEENPIWPEARDFVSIAGHGVKAMVRNKEILVGNKTLLADHDVALPIDAEEMLAEAEAMAQTGIIVSINREVVGVLAVSDPLKPAAQEVISILKSMKIRSIMVTGDNWGTAKSIAREVGIETVIAEAKPEQKAEQVKDLQASGYKVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLFGIPIAAGALFPSTGFRLPPWVAGAAMAASSVSVVCCSLLLKYYRRPKKLDSLEIRGISIE 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02419 979 Pfam E1-E2 ATPase 445 624 - -
Cca09g02419 979 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 359 959 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca09g02419 979 ProSiteProfiles Heavy-metal-associated domain profile. 195 256 IPR006121 GO:0046872
Cca09g02419 979 CDD HMA 123 185 IPR006121 GO:0046872
Cca09g02419 979 PANTHER ATP7, ISOFORM B 1 970 - -
Cca09g02419 979 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 399 932 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g02419 979 Gene3D - 194 256 - -
Cca09g02419 979 ProSiteProfiles Heavy-metal-associated domain profile. 43 109 IPR006121 GO:0046872
Cca09g02419 979 SUPERFAMILY HAD-like 645 956 IPR036412 -
Cca09g02419 979 Pfam Heavy-metal-associated domain 123 182 IPR006121 GO:0046872
Cca09g02419 979 Pfam Heavy-metal-associated domain 46 106 IPR006121 GO:0046872
Cca09g02419 979 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 1 970 - -
Cca09g02419 979 CDD HMA 46 108 IPR006121 GO:0046872
Cca09g02419 979 Gene3D - 414 536 - -
Cca09g02419 979 PRINTS Copper-transporting ATPase 1 signature 43 68 - -
Cca09g02419 979 PRINTS Copper-transporting ATPase 1 signature 69 92 - -
Cca09g02419 979 PRINTS Copper-transporting ATPase 1 signature 98 118 - -
Cca09g02419 979 PRINTS Copper-transporting ATPase 1 signature 143 164 - -
Cca09g02419 979 Pfam haloacid dehalogenase-like hydrolase 642 864 - -
Cca09g02419 979 SUPERFAMILY Calcium ATPase, transduction domain A 446 532 IPR008250 -
Cca09g02419 979 Gene3D - 119 191 - -
Cca09g02419 979 Gene3D - 41 114 - -
Cca09g02419 979 SUPERFAMILY HMA, heavy metal-associated domain 117 189 IPR036163 GO:0046872
Cca09g02419 979 SFLD p-type atpase 628 902 IPR044492 -
Cca09g02419 979 CDD P-type_ATPase_Cu-like 285 960 - -
Cca09g02419 979 SUPERFAMILY HMA, heavy metal-associated domain 190 257 IPR036163 GO:0046872
Cca09g02419 979 TIGRFAM TIGR00003: copper ion binding protein 123 184 IPR006122 GO:0005507
Cca09g02419 979 TIGRFAM TIGR00003: copper ion binding protein 45 107 IPR006122 GO:0005507
Cca09g02419 979 SUPERFAMILY Calcium ATPase, transmembrane domain M 391 929 IPR023298 -
Cca09g02419 979 Gene3D - 653 730 IPR023299 GO:0000166
Cca09g02419 979 Gene3D - 731 781 IPR023299 GO:0000166
Cca09g02419 979 SUPERFAMILY HMA, heavy metal-associated domain 43 114 IPR036163 GO:0046872
Cca09g02419 979 ProSitePatterns Heavy-metal-associated domain. 125 154 IPR017969 GO:0046872
Cca09g02419 979 PRINTS P-type cation-transporting ATPase superfamily signature 482 496 - -
Cca09g02419 979 PRINTS P-type cation-transporting ATPase superfamily signature 646 660 - -
Cca09g02419 979 PRINTS P-type cation-transporting ATPase superfamily signature 775 786 - -
Cca09g02419 979 PRINTS P-type cation-transporting ATPase superfamily signature 797 807 - -
Cca09g02419 979 PRINTS P-type cation-transporting ATPase superfamily signature 850 869 - -
Cca09g02419 979 PRINTS P-type cation-transporting ATPase superfamily signature 873 885 - -
Cca09g02419 979 ProSitePatterns Heavy-metal-associated domain. 48 77 IPR017969 GO:0046872
Cca09g02419 979 SFLD C1.7: P-type atpase like 628 902 - -
Cca09g02419 979 Gene3D - 613 907 IPR023214 -
Cca09g02419 979 ProSitePatterns E1-E2 ATPases phosphorylation site. 648 654 IPR018303 -
Cca09g02419 979 ProSiteProfiles Heavy-metal-associated domain profile. 120 186 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02419 Cca-Chr9 49564630 49570895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02419 1 979 Primary Pumps ATPases AT1G63440 76.435 0.0 1544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02419 K17686 - gmx:100810141 1798.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01791 06 33260604 33265018 Cca09g02419 09 49564630 49570895 PCT