Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02415 ATGTTTTTGTCCAATTGGAATACTCTGGATTCAGATCCTTGTGACTGGAATGGTGTTTCTTGCACTGCAACGCGGGATCATGTCATCAAGATTAACATATCGCGGTCTTCATTAAGGGGCTTTCTTGCTCCAGAATTTGGGAAAATCACCTACTTACAAGAACTGATCTTGCATGGAAACAATCTCATCGGAATAATACCTAAAGAATTGGGCTTGTTGAAATCTCTTAAGGTGTTGGATTTGGGAATGAATCAGTTATCAGGACCAATTCCTCCACAGATTGGAAATTTGGCCCAAGTTGTAAAAATAAACCTGCAGTCCAATGGATTGACTGGTAGGTTACCTCCAGAGCTAGGAAATTTGAAATACCTTCAAGAACTTCGGCTGGATAGGAATAAGCTAGAAGGACCTCTTCCTGGTGGTGGCAGTTCAAATTTTTCTTCAAAAATGCATGGGATGTATGCCTCAGGTGTGAATTTAACTGGCTTCTGTCGTTCATCTCAGTTAAAAGTTGCAGATTTTTCATATAACTTTTTTGTTGGTAGCATACCCAAATGTTTGGATTATCTTCCAAGATCAAGCTTTCAAGGAAATTGTCTCCATATCAAAGACATAAAACAGAGAACTTCGGTGCAATGTGCCGGCGCTTCACCTGCTCAAAATGGTCCTGTAGAGAAACCAAAGTATCAACTTGCTACTAAACATGTGTCCAAGCATCAAGGAGCATCAAAACCTGCTTGGCTTTTGGCTCTAGAAATAGTGACAGGAACCATGGTTGGTTCTCTCTTTCTTATTGCAATTTTCACCGCTTTCCAGAGGTGTAAGTGTAACAACAAATCATCTATCATTATTCCTTGGAAAAAATCTGCAAGTGAAAAAGATCATATGGCAGTACATATAGACTCTGAGATGTTGAAGGATGTGATGAGGTATAGCAGGCAGGATCTTGAAGTGGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGATAGTGTGGTCTACAAGGGTACGATGAAAGGTGGGCCTGAGATTGCTGTGATTTCTCTCTGCATCAAGGAAGAGAATTGGACAGCATACCTCGAGCTCTACTTTCAGAGAGAGGTGGCAGACTTGGCAAGGTTAAATCATGATAACGCAGGAAAGCTACTAGGATATTGTAGAGAGAGCAATCCATTTACAAGGATGCTGGTTTTTGAATATGCATCAAATGGAACACTTTATGACCACCTACATTGTTATGGAGAAGGGTGTCAATTGTCTTGGACACGGCGTATGAAAATTATCATAGGCATTGCACGTGGACTCAAGTATTTGCACACTGAAATCGAGCCACCATTTACTATCTCAGAATTGAATTCCAACGCGGTTTACCTCACAGAAGATTTTTCCCCCAAGCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAAAAATTATGGTTCTGTTAGCAGCCAGGGAGCCATGTGTCTTCTACCAAACTCGCTTGAAGGGCGTCATCTCGACACCAAAGGAAACATCTATGCTTTTGCTGTACTTCTACTGGAGATAATCAGTGGAAGGTCTCCATACTGCAAGGACAAAGGGTACTTGGTGGATTGGGCTAGGGACTATCTTGAAATGCCAGAAGTAATGTCATATGTGGTGGATCCTGAATTGAAACATTTTAGATATGAAGACCTCAAAGTAATATGTGAGGTGATAACGCTTTGTATCAGTCCTGATCCCTCTGCACGTCCCTCAATGCGTGAATTGTGCACTATGTTGGAGAACAGAATAGACACATCAATAAGTGTGGAGCTAAAGGCATCATCTCTAGCTTGGGCTGAACTAGCACTTTCATCATAA 1863 0.4128 MFLSNWNTLDSDPCDWNGVSCTATRDHVIKINISRSSLRGFLAPEFGKITYLQELILHGNNLIGIIPKELGLLKSLKVLDLGMNQLSGPIPPQIGNLAQVVKINLQSNGLTGRLPPELGNLKYLQELRLDRNKLEGPLPGGGSSNFSSKMHGMYASGVNLTGFCRSSQLKVADFSYNFFVGSIPKCLDYLPRSSFQGNCLHIKDIKQRTSVQCAGASPAQNGPVEKPKYQLATKHVSKHQGASKPAWLLALEIVTGTMVGSLFLIAIFTAFQRCKCNNKSSIIIPWKKSASEKDHMAVHIDSEMLKDVMRYSRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEENWTAYLELYFQREVADLARLNHDNAGKLLGYCRESNPFTRMLVFEYASNGTLYDHLHCYGEGCQLSWTRRMKIIIGIARGLKYLHTEIEPPFTISELNSNAVYLTEDFSPKLVDFESWKTILERSEKNYGSVSSQGAMCLLPNSLEGRHLDTKGNIYAFAVLLLEIISGRSPYCKDKGYLVDWARDYLEMPEVMSYVVDPELKHFRYEDLKVICEVITLCISPDPSARPSMRELCTMLENRIDTSISVELKASSLAWAELALSS 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02415 620 SUPERFAMILY Protein kinase-like (PK-like) 300 595 IPR011009 -
Cca09g02415 620 SUPERFAMILY L domain-like 2 191 - -
Cca09g02415 620 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 620 - -
Cca09g02415 620 ProSiteProfiles Protein kinase domain profile. 321 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02415 620 Pfam Leucine rich repeat N-terminal domain 2 21 IPR013210 -
Cca09g02415 620 Gene3D Ribonuclease Inhibitor 1 96 IPR032675 -
Cca09g02415 620 Pfam Protein tyrosine and serine/threonine kinase 324 593 IPR001245 GO:0004672|GO:0006468
Cca09g02415 620 PANTHER PROTEIN MALE DISCOVERER 2 2 620 - -
Cca09g02415 620 Gene3D Phosphorylase Kinase; domain 1 293 402 - -
Cca09g02415 620 Gene3D Ribonuclease Inhibitor 97 218 IPR032675 -
Cca09g02415 620 Gene3D Transferase(Phosphotransferase) domain 1 403 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02415 Cca-Chr9 49528963 49533863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02415 3 599 Receptor kinase-like Gene Family AT5G45780 28.033 1.41e-54 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Cca09g02415 PK_Tyr_Ser-Thr 3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02415 - - gmx:100779744 1097.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01789 06 33251013 33256010 Cca09g02415 09 49528963 49533863 PCT