Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02411 aTGGCATTCAGCGGGACCCAACAGAAATGCAAGGCTTGTGATAAAACTGTTCACTTCGTCGAAGGTGTAACCACCGATGGGACCACTTATCACAAGAATTGCTTCAGGTGCAGCCATTGCAATGGCCTTCTCGCAATAAGCAACTACTCATCCGCCGAAGGAGTCTTGTACTGCAAGGTACACTATGAGCAGCTTTTCAGGGAAACTGGTTCCTACCCTAGAAGATCCCAATCCTTTGGAAAGCCCCCAAACGAGCTGACTAAGAATCCAAGCAAACTTTCTGCCTTCTTCTCTGGGACACAAGAGAAATGTTCAAAATGCAAGAAAACCGTATATCCATTGGAAAAGTTGACAGTGGAAGGTGAGTTTTACCACAAATCATGCTTTAGATGTGCACATGGAGGATGTTTCTTGACCCCTTCAACCTATGCTGCTCTTGATGGATATCTCTACTGCAAGCCACACTTCTCTCAGCTGTTCAAGGAGAAGGGCAGCTACAGTTATCTGTCCAAGCAAGCTTCACTGAAGAAGAGTACTGAAATGCAGCAGAAGCAACAAGAACAACTAGAGGCTGTGAAGAAAACTGAGGAAGATCTTTCAGAATCagaggcagaggcaacaactgaaaaggaagctgaacaagctgaggaacactctgagcaagaggaagagaaagagcaagagaaggagcatgagcatgagcatgagcatgagaaggaggaggaaCACTGA 732 0.377 MAFSGTQQKCKACDKTVHFVEGVTTDGTTYHKNCFRCSHCNGLLAISNYSSAEGVLYCKVHYEQLFRETGSYPRRSQSFGKPPNELTKNPSKLSAFFSGTQEKCSKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSTYAALDGYLYCKPHFSQLFKEKGSYSYLSKQASLKKSTEMQQKQQEQLEAVKKTEEDLSESEAEATTEKEAEQAEEHSEQEEEKEQEKEHEHEHEHEKEEEH 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02411 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Cca09g02411 243 SMART lim_4 103 155 IPR001781 -
Cca09g02411 243 SMART lim_4 9 61 IPR001781 -
Cca09g02411 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 73 - -
Cca09g02411 243 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Cca09g02411 243 MobiDBLite consensus disorder prediction 222 243 - -
Cca09g02411 243 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Cca09g02411 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 168 - -
Cca09g02411 243 Gene3D Cysteine Rich Protein 98 168 - -
Cca09g02411 243 Gene3D Cysteine Rich Protein 4 74 - -
Cca09g02411 243 Pfam LIM domain 10 65 IPR001781 -
Cca09g02411 243 Pfam LIM domain 104 159 IPR001781 -
Cca09g02411 243 MobiDBLite consensus disorder prediction 187 215 - -
Cca09g02411 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Cca09g02411 243 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 212 - -
Cca09g02411 243 Coils Coil 175 241 - -
Cca09g02411 243 MobiDBLite consensus disorder prediction 179 243 - -
Cca09g02411 243 PANTHER OS06G0237300 PROTEIN 1 212 IPR045268 GO:0051015
Cca09g02411 243 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02411 Cca-Chr9 49471555 49473964 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Cca09g02411 LIM 3e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02411 - K24413 gmx:100499865 367.466