Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02408 ATGTGGGGTTGGATGCTCGGAGAAGGGAGCAGTGCAGCGCGGGAGGCGGTGTGCAGCTGGAAATGGGTGGCGGTCCGCAGCATGGGCGGCGGTCCTCGCACCTTCCCCGGCGGCGTGAACAAGTGGAAGTGGAAGCGCATGCACGAGAAGCTCGCCAGAGACAAACAGAAGCGTCTCATCCAGCAAGAGAAGCAGCTCTACGAGgctcgcatccgctcccacatccgctccgccctctcccccgaccaccgctccgccgccgccgccacccaccgccccctctcccccaccgaccAAGTGAAGGCCCTCGCCGACCGCTTCCTCAGGCACGGCGCCCAAGACCTCTGGAACGACCGCGACGGCCCCCTCACCCCGACTCCGAACCTCGGTGTCCCCACCAAGCATTCCAGGGGTTACTGCTCTGTTCCCGAGGTTGGGAACGGGAACAAGCGTGTTGGGGGTCCAAAGTTTAGGTTTTGGCGAAAGGGTAGTGATGATTCCTCCACtgagagcgagagtgagagtgagggtgaggtgGAATTCGGTTCGAAGATGGGTGGCAGTGCTTCCTTGGGGGAGTATGATGTCAAGAGAGAGAGGAGGGTTGTGCCCAAGCCATCTCAAGAGGTTGAGTTTATTAAGTATGAGCTTTTTAAGAGGAAGTTGAGCAAGATTGAGGACCAACAGGGTGAGGAGCAACAAAGCAATGAAAGCATCCTCAGCGACACGAGATTTGATGAGTGTGGTATCTCACCGCTAACGGTCAAGGCACTTTCTTCAGCTGGTTATGTTCATATGACACGGGTACAAGAGGCTAGCCTCCCTATTTGCCTTGAGGGCATGGATGCTTCAGTCAAAGCTAAAACTGGCACAGGAAAAAGTGTTGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAACAATAAGCCTCAACGGGTGCCTCCAATATATGTTCTTATTCTCTGCCCTACCAGAGAACTTGCTAGTCAAATTGCCGCTGTAGCAAAGGTTTTGCTGAAATATCACGATGGCATTGGGGTGCAGACTCTTGTTGGAGGCATAAGATTTAAAGTTGACCAAAAACGCCTTGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTCTGCGGTTAATGGGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTAGACCTGGGATTTAGAAAGGATGTAGAAAAAATTGTTGATTGTTTGCCCCGTCAAAGGCAATCTTTATTGTTTTCTGCAACCATACCAAAGGAGGTCCGTCGCGTATCTCAGCTTGTTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAATGGGTTGTGTAGAAACTCCTGTTGAGGTGAAGCAATCTTATCTTATTGCTCCTCATGAGTCACATTTACAATTAGTGCACCATATTCTGAAGGAGCATATCATGCAAACACCAGATTATAAGGTTATTGTATTCTGTATAACTGGGATGGTCACATCACTTGTGTATAACCTTCTTCGGGAAATGAAAATGAATGTTAGGGAGATACATTCCCGTAAACCTCAGCTCTATCGAACTCGTATATCAGATGAGTTTAGGGAATCCAAACAATTGATTCTTGTCTCGTCTGATGTTTCATCACGGGGAATGAATTATCCTGATGTTACCTTAGTCCTACAGGTAGGAATTCCTGATGACCGTGAACAATACATACATCGTCTTGGAAGAACAGGTCGGGAAGGCAAAGAAGGGGATGGCATATTGTTGATTGCTCCATGGGAAGAGTATTTTTTAAATGAAATCAAGAATCTACCTCTACAGAAATTCCCCTTACCAGATGTAGATCCACAAGCAAAGCTTAAGATTGAGAACTCAATGGCAAAGATTGATAATGACATCAAAGAAGCAGCTTATCATGCTTGGCTTGGTTATTATAATTCCATTAGGGAAATTGGAAGGGAAAAGACAACTATAGCTGAGCTGGCAAACCGATTTTCTGAATCAATTGGTTTGCAAAGGCCTCCTGCTCTCTTCCGAAAAACTGCATTAAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAGATAA 2139 0.4306 MWGWMLGEGSSAAREAVCSWKWVAVRSMGGGPRTFPGGVNKWKWKRMHEKLARDKQKRLIQQEKQLYEARIRSHIRSALSPDHRSAAAATHRPLSPTDQVKALADRFLRHGAQDLWNDRDGPLTPTPNLGVPTKHSRGYCSVPEVGNGNKRVGGPKFRFWRKGSDDSSTESESESEGEVEFGSKMGGSASLGEYDVKRERRVVPKPSQEVEFIKYELFKRKLSKIEDQQGEEQQSNESILSDTRFDECGISPLTVKALSSAGYVHMTRVQEASLPICLEGMDASVKAKTGTGKSVAFLLPAIETVLKAMSNNKPQRVPPIYVLILCPTRELASQIAAVAKVLLKYHDGIGVQTLVGGIRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLQMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRVSQLVLKREHKYVDTVGMGCVETPVEVKQSYLIAPHESHLQLVHHILKEHIMQTPDYKVIVFCITGMVTSLVYNLLREMKMNVREIHSRKPQLYRTRISDEFRESKQLILVSSDVSSRGMNYPDVTLVLQVGIPDDREQYIHRLGRTGREGKEGDGILLIAPWEEYFLNEIKNLPLQKFPLPDVDPQAKLKIENSMAKIDNDIKEAAYHAWLGYYNSIREIGREKTTIAELANRFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02408 712 SMART ultradead3 262 473 IPR014001 -
Cca09g02408 712 Pfam Helicase conserved C-terminal domain 490 595 IPR001650 -
Cca09g02408 712 Gene3D - 213 458 IPR027417 -
Cca09g02408 712 Gene3D - 467 691 IPR027417 -
Cca09g02408 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 614 IPR027417 -
Cca09g02408 712 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 216 711 - -
Cca09g02408 712 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 31 122 - -
Cca09g02408 712 Pfam DEAD/DEAH box helicase 267 445 IPR011545 GO:0003676|GO:0005524
Cca09g02408 712 PANTHER RNA HELICASE 216 711 - -
Cca09g02408 712 PANTHER RNA HELICASE 31 122 - -
Cca09g02408 712 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 491 641 IPR001650 -
Cca09g02408 712 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 274 457 IPR014001 -
Cca09g02408 712 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 243 271 IPR014014 GO:0003724
Cca09g02408 712 SMART helicmild6 515 596 IPR001650 -
Cca09g02408 712 CDD SF2_C_DEAD 472 605 - -
Cca09g02408 712 MobiDBLite consensus disorder prediction 140 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02408 Cca-Chr9 49451019 49454918 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02408 218 625 Eukaryotic Initiation Factors Gene Family AT1G72730 28.814 1.29e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02408 - - gmx:100808520 1221.07