Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02403 ATGCCTCAGGGAAGCCTTGAAGTTTTTCTGGTTAATGCCAAGGGTCTTGAGAACACTGATTATCTTTGTAACATGGACCCTTATGTGATCCTCATATGTCGCACACAGGAGCAAAAAAGCAGCGTTGCATCAGGTCAAGGAAGTTCTCCAGAATGGAACGAGAATTTTGTGTTCAACGTGTCTGAAGGTTTTTCCAATCTCATATTGAAGATCATGGACAGTGATTCCACCACGGCTCATGATTTTGTTGGAGAAGCTAAGATTCCACTAGATCCATTGTTTAGTGAAGGAAACATCCCACCTACGTCATACAATGTTGTCAAGGATGACAAATATTGTGGGGAAATTAAAGTTGGCCTCACTTTTAAACGTCAGGATCGCAGTGAACGCAGTTTAGAGGAAAATTTTGGGGGATGGAAGGAGTCTGGTTATAAAATTTGA 441 0.415 MPQGSLEVFLVNAKGLENTDYLCNMDPYVILICRTQEQKSSVASGQGSSPEWNENFVFNVSEGFSNLILKIMDSDSTTAHDFVGEAKIPLDPLFSEGNIPPTSYNVVKDDKYCGEIKVGLTFKRQDRSERSLEENFGGWKESGYKI 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02403 146 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 123 IPR035892 -
Cca09g02403 146 PANTHER C2 DOMAIN-CONTAINING 1 142 - -
Cca09g02403 146 Gene3D C2 domain 2 124 IPR035892 -
Cca09g02403 146 PANTHER OS02G0640000 PROTEIN 1 142 - -
Cca09g02403 146 SMART C2_3c 5 102 IPR000008 -
Cca09g02403 146 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Cca09g02403 146 Pfam C2 domain 4 98 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02403 Cca-Chr9 49417184 49419048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02403 4 128 C2H2 Transcription Factor Family AT4G21160 28.000 7.24e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02403 - - gmx:100806391 260.766