Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02395 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGAGTGAAGTGGATCAGGCAAACTTGACCAACATGGAAACTATGGAAGGGTCAAACAAATATGGAATGTATGGAACAAAGGGGGAATTTTCTGTTGATTTGAAGCTTGGCCAGGTTGGGAATTCTGGCATGGAATCAGTGATGAGCAAGTCCAAAGATGGTGTTGGAGTGTCCAAAATGGCATCCTCATCCTCAGGGTCATCTAAGAGGGCTCGTGCCCTTAGCAATGGGACACAAACAGTGTCATGCCTTGTGGATGGTTGCCATTCTGATCTCAGTAATTGTAGGGACTATCATAGGCGCCATAAGGTCTGTGAAGTCCACTCCAAGACTGCACAGGTCACAATTGGAGGCCAGAAACAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTAGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGGTTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAACCTCTAACGCGCTCTGCTAGTTTTTTGTCCACTTACCAAGGCACCCAGTTGCTACCTTTTTCAAGTTCACATGTGTACCCTTCCACTACTGTGGTGAATCCTACTTGGGGTGGAGTTGTTGGTGGTTCTGGTGATGTTAGGCTTCATGGGCACAACCAACACCAACAATTGCATTTGGTTGATAAACAGGACCTTTTTCTTGGGTCTTCTTCTCCAACCGGTTATAAAGAAGGGAAGCAAGTCGCGTTCATGCAAGGTGACCATACGCATGCCATGAACAGCCAAAGCCCACATCTGGGAGCTGGTTCGGCGGGCCAGGCCCAGATGTTTCTTAGGACGAGCCCGTACTCGGAAAGCGGTGGGCTGAGATGCAAAATGTTCAGTGATAGCCTTACAAGTTCGGTCCACGACTCCTCTCGTGCTCTCTCTCTTCTGTCATCACCTCAGCCGCACAGTCCTGGAAATGGGTTAAACCAAATGGTGAACCCCCACTCGCCGCTTATGCAGCCATTGGGCCTCAGCCTGCACGATAACAGCTTGGACCCCGTTTTGGGCCCCACTGGGAGTGACCACTCTTCCTCCATGTATAACTTAGCTTCTAATGGATCCCAGGGGAATGATGCCCCTGCACTATTTCCCTTCCAATGGGAATAG 1167 0.4953 MDWNLKAPSWDLSEVDQANLTNMETMEGSNKYGMYGTKGEFSVDLKLGQVGNSGMESVMSKSKDGVGVSKMASSSSGSSKRARALSNGTQTVSCLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSASFLSTYQGTQLLPFSSSHVYPSTTVVNPTWGGVVGGSGDVRLHGHNQHQQLHLVDKQDLFLGSSSPTGYKEGKQVAFMQGDHTHAMNSQSPHLGAGSAGQAQMFLRTSPYSESGGLRCKMFSDSLTSSVHDSSRALSLLSSPQPHSPGNGLNQMVNPHSPLMQPLGLSLHDNSLDPVLGPTGSDHSSSMYNLASNGSQGNDAPALFPFQWE 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02395 388 MobiDBLite consensus disorder prediction 58 84 - -
Cca09g02395 388 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 388 IPR044817 GO:0003677
Cca09g02395 388 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 5 388 - -
Cca09g02395 388 MobiDBLite consensus disorder prediction 311 373 - -
Cca09g02395 388 MobiDBLite consensus disorder prediction 356 373 - -
Cca09g02395 388 Gene3D - 85 155 IPR036893 GO:0003677|GO:0005634
Cca09g02395 388 MobiDBLite consensus disorder prediction 311 336 - -
Cca09g02395 388 Pfam SBP domain 94 167 IPR004333 GO:0003677
Cca09g02395 388 MobiDBLite consensus disorder prediction 67 84 - -
Cca09g02395 388 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
Cca09g02395 388 SUPERFAMILY SBT domain 92 173 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02395 Cca-Chr9 49348775 49352462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02395 1 388 SBP-box Gene Family AT5G50670 41.748 9.28e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca09g02395 SBP 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02395 - - gmx:100806507 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02395 09 49348775 49352462 Cca03g00315 03 4962040 4965702 PCT