Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02393 ATGGAGAAAGTGTTGTTCCCTATCTCATCTTCATCATCTGATTTAAAACTTGGTGATCATATCCATAATTCTAATGTTCATGTCAAGAAGGCTTCATGGCCAAGCCAGAAAGGTGGTAAAGAAATCAGTCACAAATATGCATTTCAAACAAGGAGTCAGGTTGACATACTGGATGATGGGTACCGCTGGAGAAAGTATGGGGAAAAGTCTGTCAAAAACAATAAATTTCCTAGAAGTTACTACAGATGTTCTTATAGAGGTTGCACTGTGAAGAAACAAATCCAACGGCATTGGAAAGACCAAGAGATTGTGGTAACAACCTATGAAGGGATACATATTCATCCTGTTGAGAAGTCACCTGAAAGCTTTGAGCAGATTCTGAGAAACTTTCAAATATACCATTTAAGTCTATAA 414 0.3744 MEKVLFPISSSSSDLKLGDHIHNSNVHVKKASWPSQKGGKEISHKYAFQTRSQVDILDDGYRWRKYGEKSVKNNKFPRSYYRCSYRGCTVKKQIQRHWKDQEIVVTTYEGIHIHPVEKSPESFEQILRNFQIYHLSL 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02393 137 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 3 132 - -
Cca09g02393 137 ProSiteProfiles WRKY domain profile. 52 117 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g02393 137 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 3 132 IPR044810 GO:0003700
Cca09g02393 137 Pfam WRKY DNA -binding domain 58 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g02393 137 Gene3D WRKY domain 41 117 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g02393 137 SUPERFAMILY WRKY DNA-binding domain 49 116 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g02393 137 SMART WRKY_cls 57 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02393 Cca-Chr9 49325326 49326354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02393 45 133 WRKY Transcription Factor Family AT5G13080 77.528 1.08e-49 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca09g02393 WRKY 7.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02393 - - gmx:100127378 216.468