Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02375 ATGGAAAAGCTGAATTTTGTTAAAAATGGAGTGAGCAAATTGCCTCCTGGTTTTCGTTTTCAGCCAACAGATGAAGAACTTGTCTTCCAATACTTGAAATGTAAGGTCTTCTCCTACCCTTTGCCTGCTTCTATCATTCCCGAGATCAATGTCTGCAAACATGATCCTTGGGATTTGCCAGGGAATTGTGATCATCAAGAAAGGTACTTTTTCAGTCCGAAGGAAGCAAAGTATCGAAATGGTAATCGCATGAATCGAACAACCAAGTGTGGCTATTGGAAAGCAACGGGATCAGACAAGAGAATATCATCTTCAACGTGTAGTGGTATTGTGGGGATAAGAAAAACATTGATTTTTTATGAAGGAAAATCTCCTAAAGGCTCCAGAACTCAATGGATCTTGCACGAATATCGCCTCGCCAGTGTTGAAAAAACTGGTGCTAATTGCAACTCATCTTATAACTACGTAAACGAGATAGGAGATTGGGTTCTGTGTCGCTTATGGATGAAGAAAAGAAGTGTAGAAAGTGATGGCAGCGTTAGTGGTGAGAAGCATATGCATGTTGAAAGTCATCCAAGGTTGTTTGATTTTATGATGGTAGGTAACAGTAACAGTAACAGTAACACACACTCTTGTACATCCTCATCGTGTTCAAGTTCCAGTAACATCATGGAGGTCTCTTCAAATGCATCGGATCATGAAGAAACAAGTGCCTATGCCTATTTTTAA 729 0.3992 MEKLNFVKNGVSKLPPGFRFQPTDEELVFQYLKCKVFSYPLPASIIPEINVCKHDPWDLPGNCDHQERYFFSPKEAKYRNGNRMNRTTKCGYWKATGSDKRISSSTCSGIVGIRKTLIFYEGKSPKGSRTQWILHEYRLASVEKTGANCNSSYNYVNEIGDWVLCRLWMKKRSVESDGSVSGEKHMHVESHPRLFDFMMVGNSNSNSNTHSCTSSSCSSSSNIMEVSSNASDHEETSAYAYF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02375 242 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Cca09g02375 242 Gene3D NAC domain 23 175 IPR036093 GO:0003677|GO:0006355
Cca09g02375 242 ProSiteProfiles NAC domain profile. 14 170 IPR003441 GO:0003677|GO:0006355
Cca09g02375 242 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 242 - -
Cca09g02375 242 SUPERFAMILY NAC domain 10 170 IPR036093 GO:0003677|GO:0006355
Cca09g02375 242 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02375 Cca-Chr9 49096328 49098704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02375 1 173 NAC Transcription Factor Family AT5G13180 61.272 1.23e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca09g02375 NAM 1.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02375 - - gmx:100812015 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00293 03 4417713 4419722 Cca09g02375 09 49096328 49098704 ECH
Cca07g02557 07 54645386 54646723 Cca09g02375 09 49096328 49098704 ECH
Cca09g02375 09 49096328 49098704 Cca09g02375 09 49096328 49098704 ECH