Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02372 ATGGGCTGCGCGCTCAGAAAGCAGGCGGACGCCGCCGACCGCCGCCGGCATGACACCGCCTCTAACGGCGGCGAAAGTAATGCCGTCACGGTTCGGGAGAGGCACAAGGCTCCGCACGCCGGCGAACCTTCCGGCGTTGTTCCGGCGCCGGAGCGCCGGAGACCCCGACTTGAGTCGTTCACGGCGACCCACCAGGGGTGGCCGCCGTGGCTGATGGCCGTCGTCGGCGACGCTATCGGAGATTGGACTCCTCGCCGGGCCAACACATTCGAGAAACTTGCCAAGATTGGGCAAGGAACTTATAGCAATGTGTATAAAGCAAGAGACCTTGTTACTGGGAAGATAGTGGCTTTGAAGAAAGTTAGATTTGATAACTTGGAGGCAGAGAGTGTGAAGTTCATGGCTAGAGAGATTCTTGTTTTGAGGAGGCTTGATCACCCCAATGTTGTAAAGCTTGAGGGGTTGGTTACTTCAAGAATTTCATCAAGTCTTTACTTGGTATTTGAGTACATGGAGCACGATCTTGCTGGTCTTGCAGCTGGTGTTGGTGTCAAATTCTCTGAGCCACAGGTCAAATGTTATATGAAGCAATTGCTGTCTGGCCTTGAGCATTGCCACAGCCGAGGTGTATTGCACCGCGATATTAAGGGTTCCAATCTGCTTATTGACAATGAAGGAATACTTAAAATTGCAGATTTTGGACTGGCAACTTTCTTTGATTCTAAGCAAAAGCATCCCATGACTAGTAGAGTCGTGACCCTTTGGTATCGCCCCCCCGAGCTTCTTCTTGGGGCTACATCCTATGGTGTTGGTGTTGACCTTTGGAGTGCTGGCTGCATCTTGGCGGAGCTGCTTGCTGGAAAGCCAATCATGCCTGGCCGAACAGAGGTTGAGCAGCTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAAGAAATATAAGTTGCCAAATGCTACGCTCTTTAAGCCACAGCAACCATATAAAAGATGCGTCTTAGAAACGTTCAAGGATTTTCCATCTTCTTCATTACCTCTTATTGAAACGCTTCTTGCAATAGATCCTGATGATCGTGGCACTGCCTCAGCTGCTCTAAATAGTGAATTCTTTACCACTGAGCCCTATGCTTGTGAACCATCTAGTTTACCAAAGTATCCTCCCACCAAAGAATTGGATATAAAACTGAGAGATGAAGAAGCAAGAAGGCAGAAAGCTCTAAGTGGAAAAACTAATCCAGTTGATGGTGCCAGAAGGGTTAGAGTACGGGAGCGTGGTTTGGCCATTCCAGCCCCAGAAGCCAATGCAGAGATCCAAGCGAACTTGGATAGGTGGAGAGTGGTGACTCATGCAAATGCAAAAAGTAAGAGTGAGAAATTTCCACCTCCTCATCAGGATGGAGCTGTTGGATATCCACTGGATGCATCAAACAAAGGAGGTGTTTCATTTGGAGCCACTGAAACTTCCTCTGCCTCTACCATACTTGATTCAAAATCTTCTGAATCTGTTATAAGTCATGCTGCCAGAGAGAAAGGGAGGAAATCTAACAAAGCGAATTCTGAGATAGCATCTTCTTGGAAATTTATGCGTGGATTCAAGCTATCAACAATTAGCCATTCATTTGATTTATTATTTAGAAGCAAATAA 1656 0.4716 MGCALRKQADAADRRRHDTASNGGESNAVTVRERHKAPHAGEPSGVVPAPERRRPRLESFTATHQGWPPWLMAVVGDAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEAESVKFMAREILVLRRLDHPNVVKLEGLVTSRISSSLYLVFEYMEHDLAGLAAGVGVKFSEPQVKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDSKQKHPMTSRVVTLWYRPPELLLGATSYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYKLPNATLFKPQQPYKRCVLETFKDFPSSSLPLIETLLAIDPDDRGTASAALNSEFFTTEPYACEPSSLPKYPPTKELDIKLRDEEARRQKALSGKTNPVDGARRVRVRERGLAIPAPEANAEIQANLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPLDASNKGGVSFGATETSSASTILDSKSSESVISHAAREKGRKSNKANSEIASSWKFMRGFKLSTISHSFDLLFRSK 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02372 551 Gene3D Phosphorylase Kinase; domain 1 77 172 - -
Cca09g02372 551 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Cca09g02372 551 SMART serkin_6 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02372 551 MobiDBLite consensus disorder prediction 1 53 - -
Cca09g02372 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Cca09g02372 551 PANTHER CELL DIVISION PROTEIN KINASE 61 513 - -
Cca09g02372 551 CDD STKc_CDK9_like 90 374 - -
Cca09g02372 551 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 61 513 - -
Cca09g02372 551 SUPERFAMILY Protein kinase-like (PK-like) 84 379 IPR011009 -
Cca09g02372 551 ProSiteProfiles Protein kinase domain profile. 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02372 551 Pfam Protein kinase domain 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02372 551 Gene3D Transferase(Phosphotransferase) domain 1 173 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02372 Cca-Chr9 49079164 49083270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02372 82 408 Core Cell Cycle Gene Families AT5G10270 51.312 1.61e-117 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca09g02372 Pkinase 1.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02372 K08819 - gmx:100789359 982.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02372 09 49079164 49083270 Cca09g02372 09 49079164 49083270 ECH