Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02371 ATGGATGATGGCCGCCAACATGAAAACAGCAGGCATAAGATGGATTACTACAGAGGAGCACATTCCCTGTGGAATACCGATTCCCAGCATCAAGTAAAAGAGCCAAATGCATTAGTTATGAATAAGAAGATAAGGTCCATTATGGCTGAAAGGCAGGCTGCCATTCTAGAACTTGAACTAGAGGCTGCTATATCCGAAAAGAATGAAGCCTTGGCTGCTCGAGATGCAGCCATTCGGCAAAGAGATGAAGCAATTGCTCAGAGAGATCATGCTCTTTTGGAACGTGATAATGCTCTTGCAGCCCTTCAAAGTCGGAACAATTCTGTCAACTTCCCATTTGGCAGCGGAATTCATTGTGGATCAAAACGGATGCACCATTCTTCAAACCATCTATCTAACATGACTGATGCTGCGTACAGCGCAAAGGATATGATTATAAGGGATGCCTCTCCAGTGACTGTTATACCTTCTGAAGCTGTAAAGTCTCATCAAACAAAGAAAACAAAGGATAACAAGGTAATTAATTCTAAGGCATCAAAGACACCCTGCAAAGTAAAGAAAATGGGTGAGGATTTAAACAGGCAGGCTTCTTCCGAAGGGACAAAGATCAGATCTGAATGGGACAGGCAAGATGTTGGCCTGAATTTGGTTGCATTTGATGAAACTATCATGCCAGTGCCAGTATGCACATGTACCGGCGTACCACGTCAGTGCTACAAATGGGGGAATGGCGGTTGGCAGTCATCCTGTTGTACCACGACATTGTCTATGTATCCACTACCACAACTTCCAAACAAGCGTCATGCCCGCATTGGAGGACGAAAGATGAGTGGAAGCGTCTTTACAAGACTTCTCAGTAGGTTGGCATCAGAAGGCCATGATTTATCTATACCATTGGATCTTAAGGAATACTGGGCCAGACACGGAACAAATCGCTACATCACCATCAAGTAG 954 0.4434 MDDGRQHENSRHKMDYYRGAHSLWNTDSQHQVKEPNALVMNKKIRSIMAERQAAILELELEAAISEKNEALAARDAAIRQRDEAIAQRDHALLERDNALAALQSRNNSVNFPFGSGIHCGSKRMHHSSNHLSNMTDAAYSAKDMIIRDASPVTVIPSEAVKSHQTKKTKDNKVINSKASKTPCKVKKMGEDLNRQASSEGTKIRSEWDRQDVGLNLVAFDETIMPVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVFTRLLSRLASEGHDLSIPLDLKEYWARHGTNRYITIK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02371 317 Coils Coil 53 73 - -
Cca09g02371 317 PANTHER - 1 317 IPR010409 -
Cca09g02371 317 Pfam GAGA binding protein-like family 1 317 IPR010409 -
Cca09g02371 317 PANTHER PROTEIN BASIC PENTACYSTEINE4 1 317 - -
Cca09g02371 317 SMART GAGA_bind_2 1 317 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02371 Cca-Chr9 49069938 49074787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02371 1 317 BBR or BPC Transcription factor family AT2G21240 57.367 5.74e-127 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Cca09g02371 GAGA_bind 6.4e-101 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02371 - - gmx:100813103 597.816