Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02368 ATGGCAGCTTTTTCTTCCCAATACTACCAGCCCTTTCTAGTTGACTCCCCCGCATGCTTCTTAATTACTCCTCCCATAAACGACGTGCCTTCTTTGGGGGAGCATGGCCTTATAAACACCACCACTATTACTAATACCCTTCATTCTTCTTCTCATTATTCTCACAATTTTTATCACGAGACTAGCTCTGTTGATCAAAGCTCCAAGGTTACCAATACCATCAGTGACACTGAGCCTTCTGTGGTCAAAAACCACAGTCCTGAGACATCCATGGTTGTAGACAAGCTTGAAAAGGGTGAACAGGTCACTCAGAAGGTCACCCCTATGGTGAAGAAGAGAAGAGCAAAATATGGATCTTCCTTGAGTAGCCCCTTATCAAAGGAATCaatagaaaagggaaacaagaaacaaaagaagagcaatggtgggatgaaaggagaaaagaagccaaaagaagagaaaaagGGCCCTGAAGATCCTCCAACGGGGTATATCCACGTTAGAGCAAGAAGGGGTCAAGCAACGGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGACACTGCAACGACTTGTGCCAGGCTGTGATAAGGTGACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTTTTGTCAATGAAACTTGCTTCCGTGAATCCCATGTTTTTTGACTTGGCAATGGATTTGGACACCCTCTTGGTTAGACCCGATCAGAAAATAAATATTATAGCATCACCATCACCATCGCCATTTCCACTAGCATGTGCAGCACAATGCAGACCAAACCAGGCCATAGCTTTTGCTGACACAACCACCACTACCACCAGCTTCCCCACCGCTAATAATAATGACTATCTTTTGGATTATTCATCTTCACTTTTTCTTCAAGGCCAGAGACCAAACGTCTTCTTTGAGAATTTCGGTGGTCAAATTTGGGACGCAGAAGACCAAAGAGAAAAGTTTGTTCATCCATATGGATTCGGCAATAATTCGTGTTCTTTCAATTAG 1065 0.4056 MAAFSSQYYQPFLVDSPACFLITPPINDVPSLGEHGLINTTTITNTLHSSSHYSHNFYHETSSVDQSSKVTNTISDTEPSVVKNHSPETSMVVDKLEKGEQVTQKVTPMVKKRRAKYGSSLSSPLSKESIEKGNKKQKKSNGGMKGEKKPKEEKKGPEDPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDLAMDLDTLLVRPDQKINIIASPSPSPFPLACAAQCRPNQAIAFADTTTTTTSFPTANNNDYLLDYSSSLFLQGQRPNVFFENFGGQIWDAEDQREKFVHPYGFGNNSCSFN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02368 354 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 240 IPR036638 GO:0046983
Cca09g02368 354 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 223 IPR011598 GO:0046983
Cca09g02368 354 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 354 IPR024097 GO:0006355
Cca09g02368 354 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 354 - -
Cca09g02368 354 MobiDBLite consensus disorder prediction 129 183 - -
Cca09g02368 354 Gene3D - 170 241 IPR036638 GO:0046983
Cca09g02368 354 Pfam Helix-loop-helix DNA-binding domain 177 224 IPR011598 GO:0046983
Cca09g02368 354 MobiDBLite consensus disorder prediction 94 183 - -
Cca09g02368 354 CDD bHLH_AtBPE_like 163 239 - -
Cca09g02368 354 SMART finulus 179 229 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02368 Cca-Chr9 49031224 49034766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02368 132 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 67.200 4.22e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca09g02368 HLH 3.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02368 - - gmx:100790417 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02368 09 49031224 49034766 Cca09g02368 09 49031224 49034766 ECH