Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02359 ATGATGCCCTTTTCCTTGTGCAACTCACCAAGCTCtcttcttcttttcttcttctcttGGGAACGCACAAGCCGTCCTTTGTCGGAAGAAGAAAAACAAATGATGTCTACATGGATGCAAGACATAGAAGAACAAGAATCTACTCCTCCCTCATGGCCAAACTCAAACCCCAACCAACTAAGCCCTATGTCACTCTGTGCTTACAAACCCATCCATGAAGAATGGCACGTGCCCAACAACACCACCACCCAACATGCAAGAGACATAACCTTCTCCCCAAACTTTGCCGATAATTATTTGCTCCAACCCCAACCAATCTTACCCACTTTCCCTTCCACCAACCTCGACCTCTCTCAAGTGCACAACTTTCTCGCACCCAACCCAACCTTTGGACCCGTCACCTTCGATGCGCCTTCCCATGTGGGGTTTCTTAACCCTCAAGCTTCCTTCACTTCAAACAAAGCTGATCATGATGCCGATGTCTTCTTAATGAGCTCAAGTTCAGCCATGTGTGTAGTGCCTCCACAACAACGCAGTATTGGCTTTTCGGGTTTCAAGAGTATCATAAACTCCAATCACGAGGAGGGTTTGCTTCTGAGCAAGTCCAACATACTGAGACCCCTTGAATCGTTGCCGTTATCGGGTGCACAGCCAACTCTTTTCCAAAAGAGAGCAGCACTTAGGAAAAACTTGGTTGGTAATTGCAAAGGGAAGGGTGAACTCATGGGGGGAGAGGGAGGGAATAGTAGTGATGGCAAGAAGAAGAAGACGTGTAGTGGAGAAGGTGGGAGTTTTATTGATGGGTCGGGGTTGAATTATGATTCTGATGAGAGTGATGAGAATAATAATAAGATGGAAGAGAGTGGAAGGAACGGTGGAAACAGCTCAAACGCCAATAGCACCGTCACCGGAGGCGCCGGGGATCAGAAAGGAAAGAAGAAGACGGGAATACCTGCCAAGAATTTGATGGCTGAACGCCGCCGAAGGAAGAAGCTCAATGATAGACTCTATATGCTCAGATCCATTGTTCCCAATATTAGCAAAATGGACAGGGCTTCCATTCTTGGGGATGCAATCGAGTATTTGAAGGAACTTCTACAAAGGATCAGTGACCTTCACAATGAATTGGAGGCAACACCAGCTGGATCTTTATTGACACCTGCTTCTTCAAGCTTTCATCATCCTTTGACACCGACACTACCACCCCGCATGCAAGAAGAACTTTGTCTCAGCTCGTTGCCATGCCCTAATGGCCAACCTGCGAGGGTTGAGGTTGGGTTGCGCGAAGGAGGAGCTGTAAACATCCACATGTTTTGCGACCGCAAACCTGGTCTCTTGCTTTCTACCATGAGGGCACTCGACAACCTTGGATTAGACATCCACCAGGCAGTTATCAGCTATTTCAATGGATTTGTTATGGATATTTTCCGAGCTCAGCAATGCAACGAAGGCCAGGATGTCCATCCGGAGCAAATAAAGGCAGTTCTGTTGGATTCAGCTGGCTTCAATAGCATGGCCTAA 1521 0.4681 MMPFSLCNSPSSLLLFFFSWERTSRPLSEEEKQMMSTWMQDIEEQESTPPSWPNSNPNQLSPMSLCAYKPIHEEWHVPNNTTTQHARDITFSPNFADNYLLQPQPILPTFPSTNLDLSQVHNFLAPNPTFGPVTFDAPSHVGFLNPQASFTSNKADHDADVFLMSSSSAMCVVPPQQRSIGFSGFKSIINSNHEEGLLLSKSNILRPLESLPLSGAQPTLFQKRAALRKNLVGNCKGKGELMGGEGGNSSDGKKKKTCSGEGGSFIDGSGLNYDSDESDENNNKMEESGRNGGNSSNANSTVTGGAGDQKGKKKTGIPAKNLMAERRRRKKLNDRLYMLRSIVPNISKMDRASILGDAIEYLKELLQRISDLHNELEATPAGSLLTPASSSFHHPLTPTLPPRMQEELCLSSLPCPNGQPARVEVGLREGGAVNIHMFCDRKPGLLLSTMRALDNLGLDIHQAVISYFNGFVMDIFRAQQCNEGQDVHPEQIKAVLLDSAGFNSMA 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02359 506 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 109 505 - -
Cca09g02359 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 365 IPR011598 GO:0046983
Cca09g02359 506 Gene3D - 308 380 IPR036638 GO:0046983
Cca09g02359 506 Coils Coil 359 379 - -
Cca09g02359 506 CDD ACT_UUR-ACR-like 435 495 - -
Cca09g02359 506 MobiDBLite consensus disorder prediction 236 319 - -
Cca09g02359 506 Pfam Helix-loop-helix DNA-binding domain 323 365 IPR011598 GO:0046983
Cca09g02359 506 MobiDBLite consensus disorder prediction 287 306 - -
Cca09g02359 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 386 IPR036638 GO:0046983
Cca09g02359 506 SMART finulus 322 371 IPR011598 GO:0046983
Cca09g02359 506 CDD bHLH_AtAMS_like 319 383 - -
Cca09g02359 506 PANTHER BHLH TRANSCRIPTIONAL FACTOR 109 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02359 Cca-Chr9 48937439 48941391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02359 184 479 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 59.801 2.00e-95 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca09g02359 HLH 9.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02359 - - var:108344591 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00281 03 4186114 4190626 Cca09g02359 09 48937439 48941391 ECH
Cca09g02359 09 48937439 48941391 Cca09g02359 09 48937439 48941391 ECH
Cca09g02359 09 48937439 48941391 Cca03g00281 03 4186114 4190626 PCT