Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02358 ATGGCGTCGTCGGAGGTATCGATCAAGGCGAATTCGGTGAACGGAAAAGGAGAAAACAATTCTGGTGGCTATAACAACGGCAACGATGTTAGGAGCGGTGGAGGAGACGGTCAGAATGCTTCTTCATCATCAACCGCGAGAGACGCGGAAGCTGCGCTTTACAGGGAGCTCTGGCACGCGTGTGCAGGTCCTCTTGTGACGGTGCCTAGAGAAGGAGAGCGCGTGTTCTACTTTCCTCAAGGACATATAGAGCAGGTGGAGGCGTCAACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTCCCACCAAAGATCCTTTGTCGAGTCATCAACGTGATGCTGAAGGCGGAGCCAGACACGGATGAGGTGTTTGCTCAGGTGACCTTGCTTCCGGAGCCAAATCAAGATGAGAATGCGGTGGAGAAAGAGGCTCCTCCGGCTCCGCCTCCTCGTTTTCACGTGCATTCCTTCTGTAAAACGCTGACGGCGTCTGATACGAGTACTCACGGTGGGTTTTCGGTGCTGAGACGACATGCCGATGAGTGCCTCCCTCCGCTGGACATGTCAAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTACATGCGAACGAGTGGCGATTCAGGCATATCTTTCGGGgtcaaccgcgtagacacttgctgcaaagtggttggagtgtttttgtcagctccaagaggcttgtcgctggggatgcgtttatatttttaaggggtgagaatggggaacttcgagttggtgttaggcgtgcaatgagacagcagggtaatgttccgtcttcggttatctcgagccatagtatgcatcttggcgttcttgcaactgCTTGGCATGCCATATTGACTGGGACCATGTTTACTGTGTATTACAAGCCTAGGACCAGTCCAGCTGAATTTATTGTTCCGTATGATCAATACATGGAGTCTCTCAAAAATAATTATACCATTGGGATGCGCTTTAAAATGAGGTTCGAAGGTGAAGAGGCTCCTGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATTCTGATCCCAAAAGGTGGCCCAAGTCCAAATGGAGAAGTCTTAAGGTGAGATGGGATGAAACATCTAACATACCTCGTCCTGAGAGAGTTTCCCAATGGAAAATAGAGCCTGCTCTCGCTCCTCCTGCTCTAAATCCTCTACCAATGCCCAGGCCTAAAAGGCCTCGATCTAATGTGGTTCCATCATCTCCAGATTCCTCTGTTCTTACTCGTGAAGCTTCATCTAAAGTAAGCATAGACCCTTTGCCAGCAAGTGGGTTTCAAAGGGTCTTGCAAGGTCAAGAATTATCGGCCTTGAGAGGTGGTAATTTTGCTGAAAGCAACGATTCTGATACGGTAGAGAAGTCTGGTGTGTGGCCACCTGCTGCAGATGATGAAAAGATTGATGTTGTTTCTACTTCAAGAAGATATGGATCAGAGAGCTGGATGTCAATGGGAAGGCATGAATCAACATATCCAGATCTACTTTCAGGCTTTGGGGCCCATGGAGACCAACTTCCATCCTTTGCTGATCAAAATGGTTCTGTAGCTAACCTTGGCAGGAAACATTTGTTGGATCGTGAAGGCAAACATAATGTTCTTAGTCAGTGGCCTGTAGTGCCCTCTAGTCTATCACTCAGTATATTGGACGGCAATGTAAAAGGCTCTGCTCAAGGTGTGGATACAACTTACCAAGTTCGAGGGAATTTGAGGTATGGTAGTGCATTTGGTGACTACCCTGTGCTTCATGGACATAAAGTTGAGCATTCACATGGAAGCTTTTTGATGCCACCACCACCAACTCAATATGAGAGCCCTCGTTCAAGAGAACTTTTGCCCAAACCAATAGCAGGAAAGCCTTGTGAGGTTTCAAAACCAAAAGACAGTAACTGTAAGCTATTTGGCTTCTCACTTCTCAGTAGTCCCATGGCACCAGAGCCTTCTGTATCACAAAGAAATGTTGCAAGTGAGCCTGTCGGTCACATGCAGACTACATCTCACCAACAGCGTACAATTGAAAATGATCCGAAGTCTGAGCATTCAAGGGGATCAAAGCCAGCTGATGATCTACTGATTGATGACCATGAAAAGCTGTTGCAATCTTCTCAGCCCAATCCAAAAGATGTTCAACCAAAATCTCACGGTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAGGGGATTGCACTTGGTAGGTCAGTGGACCTTACCAAATTCAGTGATTATGATGAATTAATTGCTGAACTGGACCAGCTATTTGAATTTGGAGGTGAATTAACTTCTCCACAGAAGGATTGGCTTATTGTCTACACTGATAATGAGGGGGATATGATGCTTGTTGGTGATGATCCATGGCAGGAATTTGTTGCAATGGTTCGTAAAATTTATATCTACCCCAAGGAGGAGATTCAGAAAATGAGCCCTGGCACCTTAAGCTCGAAGAATGAAGAGAATCAGTCAGCTAATGAAGGGGCAGACGCGCAAGATGTTAAATGTCAGCTCAATCATTCAGCTTCAGATACCTGA 2565 0.4288 MASSEVSIKANSVNGKGENNSGGYNNGNDVRSGGGDGQNASSSSTARDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPKRWPKSKWRSLKVRWDETSNIPRPERVSQWKIEPALAPPALNPLPMPRPKRPRSNVVPSSPDSSVLTREASSKVSIDPLPASGFQRVLQGQELSALRGGNFAESNDSDTVEKSGVWPPAADDEKIDVVSTSRRYGSESWMSMGRHESTYPDLLSGFGAHGDQLPSFADQNGSVANLGRKHLLDREGKHNVLSQWPVVPSSLSLSILDGNVKGSAQGVDTTYQVRGNLRYGSAFGDYPVLHGHKVEHSHGSFLMPPPPTQYESPRSRELLPKPIAGKPCEVSKPKDSNCKLFGFSLLSSPMAPEPSVSQRNVASEPVGHMQTTSHQQRTIENDPKSEHSRGSKPADDLLIDDHEKLLQSSQPNPKDVQPKSHGGSARSCTKVHKKGIALGRSVDLTKFSDYDELIAELDQLFEFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSANEGADAQDVKCQLNHSASDT 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02358 854 MobiDBLite consensus disorder prediction 655 683 - -
Cca09g02358 854 SUPERFAMILY DNA-binding pseudobarrel domain 155 288 IPR015300 -
Cca09g02358 854 Pfam Auxin response factor 285 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca09g02358 854 Pfam AUX/IAA family 777 819 IPR033389 -
Cca09g02358 854 MobiDBLite consensus disorder prediction 819 854 - -
Cca09g02358 854 Gene3D - 322 392 - -
Cca09g02358 854 ProSiteProfiles PB1 domain profile. 731 813 IPR000270 GO:0005515
Cca09g02358 854 MobiDBLite consensus disorder prediction 411 426 - -
Cca09g02358 854 MobiDBLite consensus disorder prediction 393 409 - -
Cca09g02358 854 SUPERFAMILY CAD & PB1 domains 733 808 - -
Cca09g02358 854 SMART B3_2 159 261 IPR003340 GO:0003677
Cca09g02358 854 MobiDBLite consensus disorder prediction 684 700 - -
Cca09g02358 854 MobiDBLite consensus disorder prediction 654 700 - -
Cca09g02358 854 CDD B3_DNA 157 259 IPR003340 GO:0003677
Cca09g02358 854 Gene3D - 727 820 - -
Cca09g02358 854 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 838 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca09g02358 854 MobiDBLite consensus disorder prediction 712 735 - -
Cca09g02358 854 Pfam B3 DNA binding domain 159 260 IPR003340 GO:0003677
Cca09g02358 854 Gene3D - 156 261 IPR015300 -
Cca09g02358 854 PANTHER AUXIN RESPONSE FACTOR 2 37 838 - -
Cca09g02358 854 MobiDBLite consensus disorder prediction 1 44 - -
Cca09g02358 854 ProSiteProfiles B3 DNA-binding domain profile. 159 261 IPR003340 GO:0003677
Cca09g02358 854 MobiDBLite consensus disorder prediction 392 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02358 Cca-Chr9 48931353 48937153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02358 1 852 B3 DNA Binding Superfamily AT5G62000 64.948 0.0 1110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca09g02358 AUX_IAA 2.2e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02358 - - gmx:100815956 1482.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02358 09 48931353 48937153 Cca09g02358 09 48931353 48937153 ECH
Cca09g02358 09 48931353 48937153 Cca03g00280 03 4175482 4180588 PCT