Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02357 ATGCGTTTCGCAAATCTCGATGACACTCCAATGTTCCGCCAGCAGCTCCAGTGTTTGGAGGAAAGTGCAGAATCGTTGCGCGTGAGATGCTGCAAGTTCTACAAAGGATGTCGAAAGTATACGGAAGGTCTTGGCGAGGCTTATGACGGGGACATTGCATTTGCAAGTGCCATAGAAAATTTTGGAGGAGGGCACAATGATCCTCATTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATTTACTATAGCATTGAGAGAAATCAGTACATACAAGGAGCTGCTCCGGTCTCAAGTTGAGCACATTTTCAATGACCGGTTAGTACCCATTGTCCATGTTGACATCCATGAAGTCAAGGAAGCTCGTAAACGTTTTGATAAAGCCTCCCTTGTATATGACCAGGCACGTGAAAAGTTTATGTCACTAAGAAAAAGCACTAGGATTGACATTGCCACTGTCATAGAAGAGGAATTGCAGGATGCAAGAGCATCATTTGAGGAAGCCCGTTTCAATCTGGTTGGCACTCTTAATAACATTGAGGTCAAAAAGAGATTTGAGTTTTTAGAGGCTATGGCTGGAATTATGGATGCTCATCTTCGACACTTTCAACAGGGGTATCAGCTACTACATCAGATGGAACCTTTCATTAGTGAGGTTATGGATTATGTACATCAGTCGAGAGAAAGTTACAATAAGGAGCAAATTTCACTTTATAAAAGAATGCAAGACTATAAAAGACACGTTTACGAAGAAAGTAGGTTGTCCTTGAATGGTCCTTATGGTTCCCCTAGTAGAGACTCTGCACATCCATTTTCTAGGATATCAAATGAAGTGGCAGATGTAGTTATGGAATCTGCTGCAAACGGAAAGGTTCAAATCATTCGACAAGGATACCTTTCAAAACGATCCTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTCTTGACAGTCGAGGAATGTTGTATTACTACCGCAAACCATGGAGTGGATCACATGGCAGCAATCAACCATCTCCAAAGAGGATTAGTGGCGATGGTTCTGGGCTTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAGCACGTCATACAGTAAACCTGCTGACATCAACAATCAAGGTTGATGCTGATCAGTCAGATTTAAGATTCTGCTTCAGGATTATTTCTCCATCAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAAATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTGTTGAGTGTCCAGACATTGGGAATGCCTTTCTCAGCTGACTCAGAAAACGATGACTCTCACTCTGACGACAATATTGATAAGTTAGGAAGTTCCCCAGATGGTGAACACACTGGGACCATAAAGTCTTCATCCAAGAATTCCAGCCCTAATCAGTTACGTTCGTTTAGAAGTTTGCAGTTGCATAAGCACAGTATAAGAATTGAAAAGCCAATTGATGCTCTTAGAAAGGTGAGTGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCCTAAACCTTGGCATCCTTATATGCATCGAATGTTCTGGTGTTCATCGAAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACACTTGATGTCAAAGTCTGGGATCCCTCTATCATAAGTATGTTTAAGTCATTAGGAAATCTTTTTGCAAACTCAGTTTGGGAGGAGCAACTGCATTCACCAAGTAATTTGCAAACTGTTGACACCCGTGCTGGTTCATCCATGGAAAATGGAGAGGAGCTATTTCATGCAAGAAAACCAAAACATGACGATTCTATTTCATTAAAGGAAAGGTTCATTCATGCTAAGTATTCTGAGAAAATATTTATTCACCGGACAAAGAAAAACCACCCTCCCCGTTCACTGGCACAGCAGGTGCAGGAAAGCATCTGTGCCAATGACAACAAAGCAGTGTACCAGCATATTGTCAAGTCGGATGTTGACATCAATGCCATCAGTTGTCAACCATTGTCTGGTAACTCTTTCAACCTGGCTTCTTCAAGTAATTTAAACATTGCATCTCAAAGTGAAAATCAGCTCTTTAATGGTTCTGGCGTGCTTCACCTAGCATGCCTAACTTGTGACGTTGGCATGGTGGATCTGCTCCTACAGCATGGAGCAGATATAAATGCTTGTGATTCTAAAGGTCGGACACCACTACATTATTGTATTATTGGAGGGAAGACCGCAACTGCAAAAGTTCTCATCATGAGGGGGGCCAATACATATATCGCAGATAAAGAAGGCAACACTCCTCTTAAGCTTGTATTAGAATCCGGTTCTGTTGGCAATGAAATTCTCCCTCTCTTGGCAAGCAGATGA 2385 0.4193 MRFANLDDTPMFRQQLQCLEESAESLRVRCCKFYKGCRKYTEGLGEAYDGDIAFASAIENFGGGHNDPHFVALGGPVMTKFTIALREISTYKELLRSQVEHIFNDRLVPIVHVDIHEVKEARKRFDKASLVYDQAREKFMSLRKSTRIDIATVIEEELQDARASFEEARFNLVGTLNNIEVKKRFEFLEAMAGIMDAHLRHFQQGYQLLHQMEPFISEVMDYVHQSRESYNKEQISLYKRMQDYKRHVYEESRLSLNGPYGSPSRDSAHPFSRISNEVADVVMESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWSGSHGSNQPSPKRISGDGSGLLSRWLSSHYHGGVHDEARHTVNLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKINGVIASLLSVQTLGMPFSADSENDDSHSDDNIDKLGSSPDGEHTGTIKSSSKNSSPNQLRSFRSLQLHKHSIRIEKPIDALRKVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPSIISMFKSLGNLFANSVWEEQLHSPSNLQTVDTRAGSSMENGEELFHARKPKHDDSISLKERFIHAKYSEKIFIHRTKKNHPPRSLAQQVQESICANDNKAVYQHIVKSDVDINAISCQPLSGNSFNLASSSNLNIASQSENQLFNGSGVLHLACLTCDVGMVDLLLQHGADINACDSKGRTPLHYCIIGGKTATAKVLIMRGANTYIADKEGNTPLKLVLESGSVGNEILPLLASR 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02357 794 ProSiteProfiles Ankyrin repeat profile. 703 735 IPR002110 GO:0005515
Cca09g02357 794 SUPERFAMILY ArfGap/RecO-like zinc finger 492 633 IPR037278 -
Cca09g02357 794 CDD BAR_SFC_plant 15 215 IPR035670 -
Cca09g02357 794 Gene3D - 636 791 IPR036770 -
Cca09g02357 794 MobiDBLite consensus disorder prediction 436 476 - -
Cca09g02357 794 ProSiteProfiles Ankyrin repeat profile. 736 768 IPR002110 GO:0005515
Cca09g02357 794 ProSiteProfiles Ankyrin repeat region circular profile. 703 734 - -
Cca09g02357 794 SMART ANK_2a 736 765 IPR002110 GO:0005515
Cca09g02357 794 SMART ANK_2a 703 732 IPR002110 GO:0005515
Cca09g02357 794 ProSiteProfiles PH domain profile. 292 423 IPR001849 -
Cca09g02357 794 CDD PH_ACAP 295 427 - -
Cca09g02357 794 PRINTS HIV Rev interacting protein signature 505 524 IPR001164 GO:0005096
Cca09g02357 794 PRINTS HIV Rev interacting protein signature 524 541 IPR001164 GO:0005096
Cca09g02357 794 PRINTS HIV Rev interacting protein signature 547 568 IPR001164 GO:0005096
Cca09g02357 794 PANTHER CENTAURIN/ARF 1 794 IPR045258 GO:0005096
Cca09g02357 794 Pfam Ankyrin repeats (many copies) 705 757 IPR002110 GO:0005515
Cca09g02357 794 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 794 - -
Cca09g02357 794 Gene3D Arf GTPase activating protein 475 635 IPR038508 -
Cca09g02357 794 SUPERFAMILY PH domain-like 293 438 - -
Cca09g02357 794 MobiDBLite consensus disorder prediction 460 476 - -
Cca09g02357 794 SUPERFAMILY Ankyrin repeat 652 782 IPR036770 -
Cca09g02357 794 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Cca09g02357 794 MobiDBLite consensus disorder prediction 440 455 - -
Cca09g02357 794 Pfam PH domain 294 422 IPR001849 -
Cca09g02357 794 SMART arf_gap_3 493 638 IPR001164 GO:0005096
Cca09g02357 794 Coils Coil 118 138 - -
Cca09g02357 794 Pfam BAR domain of APPL family 6 232 - -
Cca09g02357 794 ProSiteProfiles Ankyrin repeat region circular profile. 736 768 - -
Cca09g02357 794 CDD ArfGap 496 625 - -
Cca09g02357 794 Pfam Putative GTPase activating protein for Arf 495 632 IPR001164 GO:0005096
Cca09g02357 794 ProSiteProfiles ARF GTPase-activating proteins domain profile. 493 638 IPR001164 GO:0005096
Cca09g02357 794 SMART PH_update 293 425 IPR001849 -
Cca09g02357 794 Gene3D - 285 431 IPR011993 -
Cca09g02357 794 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Cca09g02357 794 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02357 Cca-Chr9 48890935 48910954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02357 496 631 C2H2 Transcription Factor Family AT3G07940 37.500 2.32e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02357 K12489 - gmx:100792517 1313.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00279 03 4153000 4159575 Cca09g02357 09 48890935 48910954 ECH
Cca09g02357 09 48890935 48910954 Cca09g02357 09 48890935 48910954 ECH
Cca09g02357 09 48890935 48910954 Cca03g00279 03 4153000 4159575 PCT