Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02353 ATGCCTTTTCAAATCATGGATCAGAGGGGTGTTTCAGCTTCATCCCATTTTTTTGATGACATTTCCTTTCGTTCTGAGAGGAATGTTGGATTACGAAAGCCAAAATCCATTAATGACCATTACCCACAAGGAAGCAATGGAATGGTAGCATCACCTGGCACCATTTTGAATGCTACACCACCCATTGATGTAAATGCAAAATCTGGCTTGCTGATGTCACAGGCTAGTCTACCTGGGGTTAATATAGATTCCAAGGAATCGTCTCATTATCGTCCCAGATCATTGTCTGATGCATGTCTGCATTCAGCACCTACCTCACATGGTTTAATTGGAAGCAAGATTGTGACCAATGCTGCCCCTTGTGAAAGTAGTTTATTCTCTAGCTCCATGTCTGAGATATTTAGCCAAAAGTTAAGGTTATTTGGGAATGATGTTCTGTCTGATCAGCCCATTACTGCGGGTTCTCATCCTGAAGAAGAACCATATAAATCTCTTGAAGAAATGGAAGCTGACACTATAGGGAATCTCCTACCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGATGAGTTAGGATGCAGTTCTCATGCCATAACAAATGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGATGGAAGGAGATGAACATTTAAGTTCAGGAAAAAGATTGAGTGGTCTCGATGGTGATTTTGGTTTCTTTGGAGGTTGTAAAGGAAAACTTCCTTTTGGTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGAAGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCTTGTAAGCATCGCGGGTTTGTTATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGACATTGAGATCTAGGGAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTCCAGAAAAGGATATTGGCCATGGCACACTGATGTTATCTGGACTTGATTCATCCATTTTAAATGATGACCTTAAACAGATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCAGAAATGAAGCATCACAAATTTATAGAGTATTATGATGTCCGAGCTGCTGAAGCTGCTCTCCGTGCACTGAACAAGATTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCAAGTTTGATGCACCAGTCTAAGGGGCAAGATGAGCGAGATCTTGGTCAAAGTATTATTGACAACTTATCATTAAGACAAAAGGCAACAGTGTCTTCTGGAGTAATTGGATCTGGCTGCTTGGAAAATGGATATAATCAGAGATTTCAATCTACAGTTCGACAACCTTTGAATACATTTATTGATAATGCATTCATTCATGCGAATTCTGGCATTCACAACACTGTGAGAGGGGCATCTGCACCTAGTTCAAGATTTCATCCTCATTCATTACCTGAGTATCGTGACAGTTTAGCTAATGGTAGTCCTTATAACTTCTCTAGCTCCATTAGCAACATGGCTAACAATATAGGTGCTGGAGCAACAGAAGCCTCTGATGGCAGGCATATTCAGGGAATGAGCTCATCTGGGAGCATAGCAGAGTTTAATGCGGGAGGAAATGGGATACGCCCACCTCATGGACTTTATCATATGTGGAATGGCTCCAGTTTGCAACAGCAACCATCATCAAGTACCATGCTTTGGCAGAAATCGGCATCATTTGTTAATGATGCTTGTCCTCCAGGCATTCCACAGATGTCAAGTTTTGCTAGAACACCGCCTCATATGCTGAGAACACCACATATGGACCATCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCAAAATTCTTACTTGGGAGGATCCCCTGAGGCTTCTGGTTTTCGCTTGGGTTCTCTAGGAAGTGGAGGAGGTTTTCATGGTTCCTGGCAATTTCGTCCACTGGATTTTCCTTCTCACAATGTGTTTTCTCATGTTGGTGGGAATGGCACTGATCTAGCATCCACTGCTGGACAGAACTCTCCTAAGCAGATATCTCATGTTTTCCCTGTGAGGCATCCCATGTCTTCAATGTCAAAGTTCGATGCTACCAGTGAACGAATGAGAAACCTTTATCACCGTAGAAATGAAGCAAGCCCCAACAATGTGGATAAAAAACAATATGAACTCGACTTGGGTCGCATATTGCGTGGGGAAGACAGCCGGACTACACTTATGATAAAAAATATTCCCAACAAATATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTAAGGGAACTTATGATTTTCTGTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGCTATGCCTTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCACCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAAGTAGCCTCACTTGCATATGCCCGAATTCAAGGAAAAGCTTCTCTTATAGCTCATTTCCAGAACTCAAGCCTGATGAACGAAGACAAACGATGCCGTCCTATTCTCTTCCATACAGATGGTCCAAATGCTGGTGATCCGGAGCCATTCCCCATGGGTGCCAATATTAGACTGAGACCTGGAAAATCTCGCACCGGTGGCAACGATGGCCAAGGGAGTCCGTCAACTTTGGAAAGTGGAGAAGAGTGTGCTAATGGGATAGACCCTTCAAGAAACTCTTAA 2781 0.4157 MPFQIMDQRGVSASSHFFDDISFRSERNVGLRKPKSINDHYPQGSNGMVASPGTILNATPPIDVNAKSGLLMSQASLPGVNIDSKESSHYRPRSLSDACLHSAPTSHGLIGSKIVTNAAPCESSLFSSSMSEIFSQKLRLFGNDVLSDQPITAGSHPEEEPYKSLEEMEADTIGNLLPDEDDLFSGVVDELGCSSHAITNDDFEDFDLFSSGGGMEMEGDEHLSSGKRLSGLDGDFGFFGGCKGKLPFGEQPSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYHDLRAAQNAMQALQNRTLRSRELDIHYSIPKVNAPEKDIGHGTLMLSGLDSSILNDDLKQIFGFYGEIKEIYEYPEMKHHKFIEYYDVRAAEAALRALNKIDIAGKQIKLEPGHPSLMHQSKGQDERDLGQSIIDNLSLRQKATVSSGVIGSGCLENGYNQRFQSTVRQPLNTFIDNAFIHANSGIHNTVRGASAPSSRFHPHSLPEYRDSLANGSPYNFSSSISNMANNIGAGATEASDGRHIQGMSSSGSIAEFNAGGNGIRPPHGLYHMWNGSSLQQQPSSSTMLWQKSASFVNDACPPGIPQMSSFARTPPHMLRTPHMDHHVGSAPVVTASPWERQNSYLGGSPEASGFRLGSLGSGGGFHGSWQFRPLDFPSHNVFSHVGGNGTDLASTAGQNSPKQISHVFPVRHPMSSMSKFDATSERMRNLYHRRNEASPNNVDKKQYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRPGKSRTGGNDGQGSPSTLESGEECANGIDPSRNS 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02353 926 Gene3D - 337 432 IPR012677 -
Cca09g02353 926 MobiDBLite consensus disorder prediction 871 926 - -
Cca09g02353 926 SUPERFAMILY RNA-binding domain, RBD 760 845 IPR035979 GO:0003676
Cca09g02353 926 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 320 IPR000504 GO:0003723
Cca09g02353 926 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 406 IPR000504 GO:0003723
Cca09g02353 926 CDD RRM1_MEI2_like 253 328 IPR034453 -
Cca09g02353 926 CDD RRM3_MEI2_like 761 846 IPR034454 -
Cca09g02353 926 Pfam RNA recognition motif 2 758 854 IPR007201 -
Cca09g02353 926 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 921 - -
Cca09g02353 926 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 412 IPR000504 GO:0003723
Cca09g02353 926 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 327 IPR000504 GO:0003723
Cca09g02353 926 SMART rrm1_1 255 323 IPR000504 GO:0003723
Cca09g02353 926 SMART rrm1_1 760 836 IPR000504 GO:0003723
Cca09g02353 926 SMART rrm1_1 340 408 IPR000504 GO:0003723
Cca09g02353 926 Gene3D - 248 336 IPR012677 -
Cca09g02353 926 SUPERFAMILY RNA-binding domain, RBD 251 410 IPR035979 GO:0003676
Cca09g02353 926 MobiDBLite consensus disorder prediction 899 926 - -
Cca09g02353 926 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 921 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02353 Cca-Chr9 48837052 48844996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02353 249 405 Eukaryotic Initiation Factors Gene Family AT3G16380 25.281 6.33e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02353 - - ccaj:109813669 1846.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00276 03 4047853 4056175 Cca09g02353 09 48837052 48844996 ECH
Cca09g02353 09 48837052 48844996 Cca09g02353 09 48837052 48844996 ECH
Cca09g02353 09 48837052 48844996 Cca03g00276 03 4047853 4056175 PCT