Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02352 ATGTTGCCAATGGTTCTTAGTTGGCAGTGGCAGTTACCTCTTCGAATTATGAGTAATGACCCTTCAGCGCCTCTTCATTTCTTTCAAAAATTTGAAGCAACATGCGATGCCAGAAGAAGAAAGGACATGAACCGAACCAAGAAACACCAAGAAAACGGCGTCGTCAATGTCAGGGAAGAACACGAGGAAGCACTGGTGGCCCTCGTCCAACATCGTACCCGTGAAGTCAAAAACCTACGTTACTACATCTCTCATTACACGACCCAGCTTGATGAAGCGGAAAGAAAGTTGCAAGAATCTAAATCCAAATTGGCTAAACTTCGGGGCAAAACAAGTGCAACTTTATTATCAGATGTTGAATCTAAACATGTGAAGACAGAACATGGATCAAAGAACGGTTTCACTCAAGAAAGTGATGATTTTTTCAAGAATCATCGTCTATCTAATAAGCCACACCTTCTTGTTCCTGCTGCGAGTTCGAAAATCTCGCAGTGCATACCTACACTGCCATCTTCTACTTCTCGTGCAAATGCGACAACAAAAGATTCAATTGTAGGTTCAAGTGCTCCTTCAACCATGAAGAGGGTTCAACAAGAAAATGTTGAAATCAAGGATAGAAGGAGCAAAAGGAAGCTTGGACAGAAAAGACACGAGGAATTGATTCCTTTAATATGTGGGAGTTCTTCACCAGGATCAGTGCCTTATCAAATGAGCAATCACTTCTCAAGTCAACACAAGAGGAAATTGCGATGTATTGCTTTGTGTCCTTTGAATGATCAACGTTTTGTGACGAGTGCTTTGGATGGATTGGTCAACCTGTGGGAAGTTCAATCTTCAGGatcaagagcttctctgcttagaacaacagattgtatatccccaaatcagaggagatggccagaagatatagcttggcaccctgagggaaatagcctgttttcagtatatactgctgatagtcaagactctcaaatatcagtTACAGATTTGAGTAGAGTACAAGGGGGAGTGAGAGCACGTGTCAAATTCTTAGAGGAgaagcctcatgttaagggtgttataaatagcattgtttttctgccctgggaaaataccagttttgtaactgggggaactgaccatactgtcatactatggaatgagaatggtgagaacaattggaagccagaacgattgcataggaatcttcattcttctgctgtcatgggagtagctgggatgcagcataagcaagttgtgttgtctgctggtagagacaagagaattTTGGGGTATGATGCTCGTGTAGGAAAAGAAGACTTTTTGCATCAAGTTGATAGTAAATGTTTGAGTGTCCTGCCAAATCCGTGTGACTTCAATTTATTCATGGTTCAAACCGGGACCCCTGAGAGGCAGCTTCGATTATTCGATATTAGATCAAAAAGGACAGAACTTCATGCCTTTGGATGGAAGCAAGAAAGCAGTGAATCTCAGTCAGCTTTGATAAATCAGGCTTGGTCCCCCAATGGACTGTATATATCATCTGGTTCAGCTGATCCCACAATTCACATATTTGATATGAGATATAACGGTCACATGCCTTCTCAATCTATAGAAGCTCATCAGAAACGAGTCTTCAGAGCCATGTGGCTTCAGTCTATTCCTTTTCTGGTTTCCATATCTTCTGATCTCAACATTGGGTTACACAAGGACAACTATTCAGATACCAAACAGTCAATTTGGATAAATGATAATGCCGTGATGCAAATGATGGGTCATTGGGGTGTTTGTCATCAAGTCATGTTCATTGGTCAGCAAGAGGAATGTGAACTCACTTCCACCATTCCTAAGGTTGAGGAATCAGAAGATGAAGAAAAAGTCATTGACGTTGAGCCTATCTTCATGCCAAAATTTAAGAAAAGAAAACGCCTAAGCCTTAATCGTCTTAGAGAGATTAAAGCAGATATGTGCGATGGGCAAAGTAGTGACATGGCTAAAACAAAGAAGTGTGCAAGCAGAGACAGATGGTCAGCTAAGAGGTATAAGTTGGCTGAGCAAAGCATGTGGGAGGTCTTAAAAGGTGAAGGTGCAACTTTTGAAAATCCAATTACCCGAAATGCACTAAGATTGGCTGCCCGTAAGCACATTGGTGATACTGGACTATTAGACCACTTACTAAAGCACATTGATGGTAAAGTGGCACCTGGAGGAACTGAGCGGTTCCGACGGTGGTTCAACACCAATGGAATCATGGAGTATTGGTTGGAGAGTGCTAGTTTGGATAAGATCCGCCAGGAGGCCGGGATGCAAGACCCTTACTGGATACCACCGTCTTCTTTAAGGGCATGCAGTGTTCCTACTCTGAATACTGATTCCATTGGTGAACTGAAAATGCTTAAAATAGAAATGGCCCAGATGAAAAAAGATATGCAAGAGCTCATTGCCAAGAAGCAAGAAAAAAACGAAATGTGTTTGATGAAGGAGACACAGAAAAATTATGTGAATTGGAAAGCTATGACTGAGCAGCGTGTAACTGATATTATAAATTCTTTGAAGGGTGTGCAGGGCATGCATGAAGACATGTTGATTTGGAAAACTAAAGTTGAGCAACAGCTTATGCAAATAACCAACAAATTGAGTGGTGTGCAGACATTGAGAGAACACACCACTTCAAGTTATTCTCCTGTAAGATGGGAGGATTGGCTGGAAAGCACCAACCTAGACAATATTCAGGGAAATGAACTTGGACCTTGGTTTGGGAATCCTGAGCTACTTAATGTTCTTCCACAAGAGGTTGTACTTCAAGATCCAAACTTAACCCTACCAACTCAGCTGCACGGGGTAGAACTGACTAACATGAGGAGCAATTTGCTGGAGTTGGTGCCAGAGAAGCTAAAGGAAGATCAAACTAATGTGACACCTGATTCTTCTACGACGGTTAACTCAAAATCAGAAACTGACAATTCATTGATATTGTTTCAGGAAATGTTCATGGAGTTATTTACATCAAGGGATAAAATGGAGCAGCAGTTATTGGATATATCAAATACTGTATATCGTATGCTGGCAATGAAATAG 3057 0.3641 MLPMVLSWQWQLPLRIMSNDPSAPLHFFQKFEATCDARRRKDMNRTKKHQENGVVNVREEHEEALVALVQHRTREVKNLRYYISHYTTQLDEAERKLQESKSKLAKLRGKTSATLLSDVESKHVKTEHGSKNGFTQESDDFFKNHRLSNKPHLLVPAASSKISQCIPTLPSSTSRANATTKDSIVGSSAPSTMKRVQQENVEIKDRRSKRKLGQKRHEELIPLICGSSSPGSVPYQMSNHFSSQHKRKLRCIALCPLNDQRFVTSALDGLVNLWEVQSSGSRASLLRTTDCISPNQRRWPEDIAWHPEGNSLFSVYTADSQDSQISVTDLSRVQGGVRARVKFLEEKPHVKGVINSIVFLPWENTSFVTGGTDHTVILWNENGENNWKPERLHRNLHSSAVMGVAGMQHKQVVLSAGRDKRILGYDARVGKEDFLHQVDSKCLSVLPNPCDFNLFMVQTGTPERQLRLFDIRSKRTELHAFGWKQESSESQSALINQAWSPNGLYISSGSADPTIHIFDMRYNGHMPSQSIEAHQKRVFRAMWLQSIPFLVSISSDLNIGLHKDNYSDTKQSIWINDNAVMQMMGHWGVCHQVMFIGQQEECELTSTIPKVEESEDEEKVIDVEPIFMPKFKKRKRLSLNRLREIKADMCDGQSSDMAKTKKCASRDRWSAKRYKLAEQSMWEVLKGEGATFENPITRNALRLAARKHIGDTGLLDHLLKHIDGKVAPGGTERFRRWFNTNGIMEYWLESASLDKIRQEAGMQDPYWIPPSSLRACSVPTLNTDSIGELKMLKIEMAQMKKDMQELIAKKQEKNEMCLMKETQKNYVNWKAMTEQRVTDIINSLKGVQGMHEDMLIWKTKVEQQLMQITNKLSGVQTLREHTTSSYSPVRWEDWLESTNLDNIQGNELGPWFGNPELLNVLPQEVVLQDPNLTLPTQLHGVELTNMRSNLLELVPEKLKEDQTNVTPDSSTTVNSKSETDNSLILFQEMFMELFTSRDKMEQQLLDISNTVYRMLAMK 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02352 1018 Pfam WD domain, G-beta repeat 496 519 IPR001680 GO:0005515
Cca09g02352 1018 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 40 563 - -
Cca09g02352 1018 Gene3D - 387 607 IPR015943 GO:0005515
Cca09g02352 1018 SMART WD40_4 524 563 IPR001680 GO:0005515
Cca09g02352 1018 SMART WD40_4 386 426 IPR001680 GO:0005515
Cca09g02352 1018 SMART WD40_4 482 519 IPR001680 GO:0005515
Cca09g02352 1018 SMART WD40_4 234 275 IPR001680 GO:0005515
Cca09g02352 1018 SMART WD40_4 340 380 IPR001680 GO:0005515
Cca09g02352 1018 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 40 563 - -
Cca09g02352 1018 Coils Coil 83 110 - -
Cca09g02352 1018 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 284 IPR001680 GO:0005515
Cca09g02352 1018 SUPERFAMILY WD40 repeat-like 247 561 IPR036322 GO:0005515
Cca09g02352 1018 Coils Coil 789 816 - -
Cca09g02352 1018 MobiDBLite consensus disorder prediction 166 195 - -
Cca09g02352 1018 Gene3D - 226 386 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02352 Cca-Chr9 48822171 48829659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02352 668 752 PHD Transcription Factor Family AT5G22260 40.698 3.43e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02352 - - ccaj:109813667 1140.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02352 09 48822171 48829659 Cca09g02352 09 48822171 48829659 ECH
Cca09g02352 09 48822171 48829659 Cca03g00275 03 4021707 4034522 PCT