Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02327 ATGGGTAGAACTCCTTGTTGTGACAGAGAACACACAAATAGAGGAGCTTGGTCCAAAGAGGAAGACGAACGCCTCATTAACTATATCAAGCTTCATGGGACAACCAATTGGAGATCCCTTCCCCAATCAGCAGGCTTGCTTCGATGCGGCAAAAGTTGCAGACTCAGATGGTTGAATTACCTAAGACCCAATATCAAGAGAGGGAACTTCACTGTAGAAGAGGCCAACCACATCATTCACCTCCATGGCTTACTAGGAAACAAATGGTCTCAAATAGCTGCAACTTTACCTGGTCGAACTGACAATGAAATAAAAAACTATTGGAACACATGCCTAAAGCGTCACCTCATATCCCTTGGCATCGACCCTGTAACCCATAATCCATTGGAAAAGATCACAACAACTCCAGAAGCTAACTCTCAAGCGTCCGGGTCCGGGGTCACCACCACAAGCGACATCCACTATTTTGATGTTTTTCTCAATTCAAAGGTGGAGATTAGCACTGATTATGCAGCTGGTGAAGAAGACTCAAGTAGCAACAATGTTGTTACTACCAGCATAGAGGAAGTTCATCCTCCACTTATCAACTTGGATCTTTCCTTAGCTCCACCCTCCCAACCCCAAGAGCAACAAGAACAAGTTTTGTCCCAACGTATGTGCTTGAGGTGCGGTCTAGGGTTGCAAAGTAACCCATCTTGTAGTTGTCAAGCCATGGTTTCTGTTGTTACTGCACCTGTTAGTAACAATGTTGAGTATCAGTTTTTTGGGATTTGA 774 0.4432 MGRTPCCDREHTNRGAWSKEEDERLINYIKLHGTTNWRSLPQSAGLLRCGKSCRLRWLNYLRPNIKRGNFTVEEANHIIHLHGLLGNKWSQIAATLPGRTDNEIKNYWNTCLKRHLISLGIDPVTHNPLEKITTTPEANSQASGSGVTTTSDIHYFDVFLNSKVEISTDYAAGEEDSSSNNVVTTSIEEVHPPLINLDLSLAPPSQPQEQQEQVLSQRMCLRCGLGLQSNPSCSCQAMVSVVTAPVSNNVEYQFFGI 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02327 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca09g02327 257 PANTHER TRANSCRIPTION FACTOR MYB7 1 216 - -
Cca09g02327 257 CDD SANT 69 110 IPR001005 -
Cca09g02327 257 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca09g02327 257 SMART sant 66 114 IPR001005 -
Cca09g02327 257 SMART sant 13 63 IPR001005 -
Cca09g02327 257 CDD SANT 16 61 IPR001005 -
Cca09g02327 257 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca09g02327 257 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca09g02327 257 Gene3D - 69 115 - -
Cca09g02327 257 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 216 - -
Cca09g02327 257 Gene3D - 14 66 - -
Cca09g02327 257 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca09g02327 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca09g02327 257 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02327 Cca-Chr9 48594909 48596562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02327 1 257 MYB Transcription Factor Family AT2G16720 47.015 1.32e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g02327 Myb_DNA-binding 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02327 K09422 - pvy:116145632 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02327 09 48594909 48596562 Cca03g00246 03 3595214 3596703 PCT