LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g02321	ATGGCATCTGCCACGGTTCGGAGGAGCATCATCACTTACTACTCCAAGTTTGCTTCTTATTCCTCTTTGCTCTCTCGCCATTCCTCAATCCAAAACCCTCTCTCTGCGTCTCTTTCTTCCTTTCATAGCGAAGCTGTTGCTGGTGGTGGTGGTGGATTGCCATCTTACATGCGTGGAGCTGTGCATTGGGAACCCAACAAGCCTCTAACCATCGAAGAATTTCGCATGCCTCGCCCCAAGGCCGGCGAAGTTCTCATCAAAACCAAGGCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGTTTCACAGTCCTTGTGTTTTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGACCACAATCTGACAGCAAAACCATAGAAAGACTTCCGGTTGGATCCCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAGGGGCCATGATGATCTATGTGAGGATTTCTTTGCTTATAACCGGGCAAAAGGAACCCTCTATGATGGAGAAACTCGACTCTTTCTTCAAAACAGTGGAAAACCAGTATTCATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTGTTACCAGAATCATTGCCATATACAGAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTATGGTGCTATGGCTCATGCGGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGGGGTGTTGGTTCTAGTTGTTTGCAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGATGTTCGGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATAATTGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCATTGGGAAAATCACAGACATTTGCTCAATGTACACAAAGTGTGAGGGATGGGGGAAAAGCCGTGATGATTGGTCTGGCACAAGCTGGTTCTTTAGGAGAGGTGGACATAAATCGGCTTGTTCGCAGAAAGATACAAGTTATTGGCTCATATGGAGGCAGGGCAAGGCAAGATCTTCCAAAGTTAATTAGATTAGCCGAAACAGGTATCTTCAATCTTAATCATGCTGTTTCTAGAAGATACACTTTTGAGGAGGCAGGCAAAGCATTCCAAGATCTCAATGAAGGAAAAATTGTCGGTCGAGCCGTAATCGAGATAATATAG	1287	0.4522	MASATVRRSIITYYSKFASYSSLLSRHSSIQNPLSASLSSFHSEAVAGGGGGLPSYMRGAVHWEPNKPLTIEEFRMPRPKAGEVLIKTKACGVCHSDLHVMKGEIPFHSPCVLGHEITGEVVEHGPQSDSKTIERLPVGSRVVGAFIMPCGNCSYCSRGHDDLCEDFFAYNRAKGTLYDGETRLFLQNSGKPVFMYSMGGLAEYCVVPANGVSVLPESLPYTESAILGCAVFTAYGAMAHAAQVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDVRDEKLQKAKTFGATHTVNSAKEDPIEKIIEITGGKGVDVAVEALGKSQTFAQCTQSVRDGGKAVMIGLAQAGSLGEVDINRLVRRKIQVIGSYGGRARQDLPKLIRLAETGIFNLNHAVSRRYTFEEAGKAFQDLNEGKIVGRAVIEII	428

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g02321	428	Gene3D	-	61	417	-	-
	Cca09g02321	428	Pfam	Alcohol dehydrogenase GroES-like domain	82	212	IPR013154	-
	Cca09g02321	428	PANTHER	NAD-DEPENDENT ALCOHOL DEHYDROGENASE	57	426	-	-
	Cca09g02321	428	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	114	128	IPR002328	GO:0008270\|GO:0016491
	Cca09g02321	428	Pfam	Zinc-binding dehydrogenase	257	388	IPR013149	-
	Cca09g02321	428	SUPERFAMILY	GroES-like	53	260	IPR011032	-
	Cca09g02321	428	PANTHER	NAD-DEPENDENT ALCOHOL DEHYDROGENASE	57	426	-	-
	Cca09g02321	428	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	219	392	IPR036291	-
	Cca09g02321	428	SMART	PKS_ER_names_mod	64	425	IPR020843	GO:0016491
	Cca09g02321	428	Gene3D	-	234	371	-	-
	Cca09g02321	428	CDD	Zn_ADH10	57	426	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g02321	71	349	Monolignol Biosynthesis Gene Families	AT4G37970	27.622	9.30e-19	84.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g02321	-		-	gmx:100775182	777.319