Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02320 ATGCCTCTTTTAAGGAGAAAGCCTTTTGCCTTGGCAGAGCTTCCTGTGGATTTGAAGCCAGATGAGCTTGTTTACCAAATTCGATTTACAAAAGAAATATTTCGAGATTATCATGAATATTTGAAGCGATTAAATCTATACCGCCAGAGGGTTTGGATGTGTAAAGTCACTGGAAAAACTGTCTTGACTTATGAAGAAGCCATGGTGTCTGAACAACGTGCTACAGAGAAAGTTCAACAGATTCCTAAAGAATTAATGACTACTGCTTTAAGGATTATTCAATACAGCATGCTCCCTTTGAAGGATCTTGCTGATTTTATTGCTGAAAAATTGCAGAAGCGTTTGTTTGTGGGTGCTGAATTACATGGGAAAAAAGATGATGGAGTACATCCATGCAAAATATTAAAAGTCATTCAGAAAGGAGTTGATAAATTCTGTTATGAGGTAGCTTGGCTTGACAAAAACAAGAATATAAGTGAAAGAGCAGAAGTCAGCGCAGAAGATTTGGTGCATAAGAAACCACTTTTTAGTAGAAATATTTTGAAATCTTTTATTCGGGAGTCTACATATCGGAATGCCCCTTGGGTTTTGCATGATGAACTGGCAAAAAATCATGGAATCTCAACTGACATTCCTGAGGAGTTAAGAGGAAGAGTTTTTTTCAAAGACGGACTTTTAATTTGCTCCAAGAAAAGGAAAAATGAGGAATCACTGGAAGACAGTGATGGTAAAAGGAAGAAGTTGGTTGGGGCACAAGTCGTTGATTCTGGCCTGGAGAAAGAAAACGGCCGACACAAGGATGAACCAATCAAATACCCCATTGATGATTTATTGGTGAAGCCTAGTCCAGATGATCCTGTTTTCACTGATCGTCCTTCTCCATCAAGAGACTTCAATATTCCAATGAGTTGCGTAGGGGATCTCTTAATGGTTTGGGATTTTCTTACTTCTTTTGGTAAACTGTTGCACTTGTGGCCATTCTCTCTAGAAGATTTTGAAAATGCAGTCTGCCATAAGGATAGCAATGTGGTTCTCCTTGTGGAATCTCATGCAGCACTTTTTCGACTTCTCATCAAAGAAGATGATGAATGCTCCTCGGCTGTGAAGAAGCGAAAGTTGAAGTCTAAGATTACAATGATTAATTGGACAGAATATTTATGCAATTTCCTAGAGATGATCAATATTCCTGAACTACAGCACTGTGAAGCAACTATAAAACGGGGACATTATGGCCTTGTGGATGCCAGTGTTAAACTAGAAATCTTATGCAATTTGGTCAATCGAACAGTTGGATCTGCAATTTTCAGGGAGAAGTTAGATGTGATCATTGAACAGCGGCAGGCACTTGGGGCCACTAGAAGGGAAGAAGCACTGGAAAAAGCTAGGAGGAGAAGAGAAGAAAAGGAGCGGTTGAAAGCTGAGGCAGAAAGCAATGGATATGTGAATGGGCATCATATGAACGGTGCAAATGTCCTTACAAACAATATGCATGGTATACAAAATGGAGAAGCACAAAATGGTGATGTGGGAGAGAAAAGTAAGATAAAGATAGAATCATCTGGGCAAAACGATCCATTGAGTGGAAGTGGGATCAACCATTTAAATACTGCTTCAAAAAAGACGCCTAAGAAGCAAAATTCAGAGCTGAAAGAACCAATGGAAAATGGAAAAGAATTATCCAGAAAGGAATCACCGAAACAGTTGAAGGGTGATAAGAATCCATCAGAGAAGAATAGTGAAGAACAGAGGAAGGAATATTTTGAACGGGAAATGGAGAAACGAATTATTCGTAGAAGCCCATTAGGTAAGGATAGAGATTACAATAGGTATTGGTGGTTCCGTCGTGATGGGAGGATATTTGTTGAAAGCTGTGACTCCAAGGAGTGGGGATACTACAGCAGTAAGGAAGAGCTTGATGCATTGATGAGTTCACTGAATTGCAAGGGTGAGCGGGAAAGGGCACTGCGAAAACAATTAGAAAAATATTATAACAAAATATGCTTGGAATTCCAGAAAAGATCGAAGGATTTGATGCACAAGATTTTGGATGAGTCTGTGCTTCGAAGGTCTACTCGTGTTAGAGCTCCACCTAGACAGAACCCTGCAAATGCTTTTCTCAGATATGTTAACAAATGGAAAGAAGAATAG 2148 0.3939 MPLLRRKPFALAELPVDLKPDELVYQIRFTKEIFRDYHEYLKRLNLYRQRVWMCKVTGKTVLTYEEAMVSEQRATEKVQQIPKELMTTALRIIQYSMLPLKDLADFIAEKLQKRLFVGAELHGKKDDGVHPCKILKVIQKGVDKFCYEVAWLDKNKNISERAEVSAEDLVHKKPLFSRNILKSFIRESTYRNAPWVLHDELAKNHGISTDIPEELRGRVFFKDGLLICSKKRKNEESLEDSDGKRKKLVGAQVVDSGLEKENGRHKDEPIKYPIDDLLVKPSPDDPVFTDRPSPSRDFNIPMSCVGDLLMVWDFLTSFGKLLHLWPFSLEDFENAVCHKDSNVVLLVESHAALFRLLIKEDDECSSAVKKRKLKSKITMINWTEYLCNFLEMINIPELQHCEATIKRGHYGLVDASVKLEILCNLVNRTVGSAIFREKLDVIIEQRQALGATRREEALEKARRRREEKERLKAEAESNGYVNGHHMNGANVLTNNMHGIQNGEAQNGDVGEKSKIKIESSGQNDPLSGSGINHLNTASKKTPKKQNSELKEPMENGKELSRKESPKQLKGDKNPSEKNSEEQRKEYFEREMEKRIIRRSPLGKDRDYNRYWWFRRDGRIFVESCDSKEWGYYSSKEELDALMSSLNCKGERERALRKQLEKYYNKICLEFQKRSKDLMHKILDESVLRRSTRVRAPPRQNPANAFLRYVNKWKEE 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02320 715 MobiDBLite consensus disorder prediction 483 502 - -
Cca09g02320 715 MobiDBLite consensus disorder prediction 543 584 - -
Cca09g02320 715 Pfam DDT domain 303 360 IPR018501 -
Cca09g02320 715 MobiDBLite consensus disorder prediction 519 542 - -
Cca09g02320 715 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 596 662 IPR028941 -
Cca09g02320 715 ProSiteProfiles DDT domain profile. 302 363 IPR018501 -
Cca09g02320 715 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Cca09g02320 715 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Cca09g02320 715 MobiDBLite consensus disorder prediction 468 584 - -
Cca09g02320 715 Coils Coil 451 478 - -
Cca09g02320 715 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 713 - -
Cca09g02320 715 SMART testlast3 302 363 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02320 Cca-Chr9 48512272 48522176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02320 572 661 Homeobox Transcription Factor Family AT1G28420 38.384 4.25e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Cca09g02320 WAC_Acf1_DNA_bd 1.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02320 - - gmx:100789956 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02320 09 48512272 48522176 Cca03g00238 03 3510103 3516213 PCT