Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02309 ATGAGTAGTCCTCCGGTGAATTCGTTGGCAGTGGCATACGAAGCATGGACAAGTCTGGCAGTCCCAGATTGGCTGAACAAAGGAGACAACGCATGGCAAATGGTGGCGGCCACGCTGGTCGGAATCCAAAGCATGCCGGGGCTGGTCATCCTGTACGGAAGCATCGTGAAGAAGAAATGGGCCGTGAACTCGGCCTTCATGGCCCTCTACGCCTTCGCGGCGGTGGTCATCTGTTGGGTGACGTGGGCCTACAAGATGTCCTTCGGGGAGAAGCTCCTGCCCTTTTGGGGCAAAGCCGGGCCCGCCTTGGGCCAGAAGTTTTTGCTCAAGCAGGCCGCCCTGCCCGCCACGCCGCATCACTTCAGCAACGGCGAGCTGGAGACGGCGGAGATTGAGCCCTTCTACCCGATGGCGACCATGGTGTGGTTTCAGTGCGTTTTTGCGGCCATTTCGCTCGTTATCTTGGCGGGGTCGGTCTTGGCTAGGATGAGCTTCAAGGCTTGGATGATGTTCGTGCCGCTTTGGCTCACCTTTTCTTACACCGTTGGCGCCTTCAGCTTGTGGGGTGGGGGTTTCCTCTTCCATTGGGGTGTTATGGATTACTCTGGTGGCTATGTCATTCATCTTTCTTCTGGGATTGCTGGCTTCACTGCTGCTTATTGGGTCGGCCCAAGATCCAAGAAGGACAGAGAGAGATTCCCCCCAAACAACGTCCTACTCACGTTGGCCGGGGCCGGCCTCCTCTGGATGGGATGGGCCGGTTTCAACGGCGGAGATCCCTACGCCGCCAACACCGACTCCTCTATGGCTGTGCTTAACACCAACATTTGCGCCGCCACCAGCATCCTTGTCTGGACCTGGCTCGACGTTATTTTCTTCAAAAAACCCTCCGTTATTGGAGCCGTTCAGGGCATGATAACTGGCCTTGTTTGCATCACTCCTGGAGCTGGTTTGGTTCAAGGATGGGCAGCCATAATAATGGGAGTGCTTTCAGGCAGTGTCCCATGGTTCAGCATGATGGTATTAGGCAAAAAGTTGAAAGTCTTTGAAATGGTTGATGACACCCTCGCCGTGTTCCACACTCACGCTGTGGCTGGTCTTCTTGGAGGCATACTCACTGGCATATTTGCGGAGCCACGTCTAAGTACACTCTTTGTACCCGTCACCAACTCCAAAGGTGCAGTCTATGGAGGCTCTGGTGGAGTCCAAGTCCTTAAACAAATCGTGGGAGGCTTGTTCATCATTGGTTGGAACCTCGTCGCCACTTCAATCATTTGTGTGGTTATAAGTTACATCGTTCCGTTGAGAATGACCGAGGAAGAGCTTCTCATTGGGGATGATGCGGTTCATGGGGAAGAGGCCTATGCGTTGTGGGGTGATGGAGAGAAACTTAGCATCTACAAAGATGATACCACTCACCATCATGTCATCGCTAGTGGTGCCACTCAAGTCGTCTAG 1458 0.5398 MSSPPVNSLAVAYEAWTSLAVPDWLNKGDNAWQMVAATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWVTWAYKMSFGEKLLPFWGKAGPALGQKFLLKQAALPATPHHFSNGELETAEIEPFYPMATMVWFQCVFAAISLVILAGSVLARMSFKAWMMFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLTLAGAGLLWMGWAGFNGGDPYAANTDSSMAVLNTNICAATSILVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIIMGVLSGSVPWFSMMVLGKKLKVFEMVDDTLAVFHTHAVAGLLGGILTGIFAEPRLSTLFVPVTNSKGAVYGGSGGVQVLKQIVGGLFIIGWNLVATSIICVVISYIVPLRMTEEELLIGDDAVHGEEAYALWGDGEKLSIYKDDTTHHHVIASGATQVV 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02309 485 PRINTS Rhesus blood group protein signature 144 160 IPR002229 GO:0005887
Cca09g02309 485 PRINTS Rhesus blood group protein signature 239 257 IPR002229 GO:0005887
Cca09g02309 485 PRINTS Rhesus blood group protein signature 270 292 IPR002229 GO:0005887
Cca09g02309 485 PRINTS Rhesus blood group protein signature 325 343 IPR002229 GO:0005887
Cca09g02309 485 PRINTS Rhesus blood group protein signature 363 379 IPR002229 GO:0005887
Cca09g02309 485 SUPERFAMILY Ammonium transporter 24 437 - -
Cca09g02309 485 TIGRFAM amt: ammonium transporter 29 455 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cca09g02309 485 Gene3D Ammonium transporter AmtB like domains 7 458 IPR029020 -
Cca09g02309 485 PANTHER AMMONIUM TRANSPORTER 17 468 - -
Cca09g02309 485 Pfam Ammonium Transporter Family 31 455 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cca09g02309 485 ProSitePatterns Ammonium transporters signature. 200 225 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cca09g02309 485 PANTHER AMMONIUM TRANSPORTER MEP2 17 468 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02309 Cca-Chr9 48359168 48362188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02309 137 474 Inorganic Solute Cotransporters AT2G38290 70.414 3.96e-166 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02309 K03320 - gmx:100785993 921.383