Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02308 ATGTTTCGCCCAAATTTTAGCAGGGGTCCTCTCAAAATATTGACGAGGTGGCTCATATTCCTTACTATCTTCAAACTCAGTTCTGCTATCAACAATCCTGATATAGAAGGTGAAGCTCTGCTCGATTTTTTGCATTTCCTCAATGATTCCAATAAGCAAATAAGAGACTGGGACAGTCATTTAGTGAGCCCTTGCTTCAGTTGGTCTCGTGTTACTTGCAGAGACCAGCATGTCATATCTGTGTCCTTAGCTTCAGTTGGATTTTCTGGAACACTCTCTCCCTCTATTACCAAATTGAAATATTTGGTTAGCTTGGATTTGCACAATAACAATCTTTCAGGATCCTTGCCTGATTACATTTCAAACATGACAAACCTACAATATCTAAATCTTGCTGACAATAATTTTAGCGGTCCTATACCAGCTAAATGGGGTCAACTATCCAATCTAAAGCAACTGGATCTTTCATCCAATGATCTTACTGGAAGTATCCCAATGCAACTCTTTTCAATTCCAATGTTTAACTTTTCAGATACGCATCTTAAATGTGGCCCTGGCTTCGATCAACCTTGTGATTTTAAATCTGAAAATCCAGATTCATCCCACAAATCAAAAATGGCAAAAATTGTACGTTATGCAAGTTGTGGTGCTTTTGCACTTCTGTGTCTTGGGGCTATCCTTACGTATGGATACCATCAAATGCTTAGGCGCACAAGGGAAATCTTTGTTGATGTTTCAGGTGAAGACGATACCAAAGTTTCTTTTGGGCAGTTGAGaaaattttcttggcgtgaactccaacttgccactaaaaatttcagtgaaagcaatgtaattggtcagggtggttttggaaaagtgtacaaaggagtactctctgataacacaaaggtcgctgtaaaaCGCCTTCTTGATTATCATAATCCTGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCAACTTATAAGCGTTGCAGTTCATAGAAACCTCCTAAGACTAATTGGCTTCTGCACAACCACAACTGAAAAAATCCTTGTATACCCTTTCATGGAAAATCTTAGTGTAGCATATCGACTCAGAGGTAAAACTAAAACTAGATTGCTGTTTTTATCATTTTCACCATGCTTCAAATTCAAACTTAAGTTTCAGTCTTGA 1155 0.3446 MFRPNFSRGPLKILTRWLIFLTIFKLSSAINNPDIEGEALLDFLHFLNDSNKQIRDWDSHLVSPCFSWSRVTCRDQHVISVSLASVGFSGTLSPSITKLKYLVSLDLHNNNLSGSLPDYISNMTNLQYLNLADNNFSGPIPAKWGQLSNLKQLDLSSNDLTGSIPMQLFSIPMFNFSDTHLKCGPGFDQPCDFKSENPDSSHKSKMAKIVRYASCGAFALLCLGAILTYGYHQMLRRTREIFVDVSGEDDTKVSFGQLRKFSWRELQLATKNFSESNVIGQGGFGKVYKGVLSDNTKVAVKRLLDYHNPGGEAAFEREVQLISVAVHRNLLRLIGFCTTTTEKILVYPFMENLSVAYRLRGKTKTRLLFLSFSPCFKFKLKFQS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02308 384 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Cca09g02308 384 ProSiteProfiles Protein kinase domain profile. 273 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02308 384 SUPERFAMILY Protein kinase-like (PK-like) 252 365 IPR011009 -
Cca09g02308 384 SUPERFAMILY L domain-like 37 172 - -
Cca09g02308 384 Gene3D Phosphorylase Kinase; domain 1 242 349 - -
Cca09g02308 384 Pfam Protein tyrosine and serine/threonine kinase 276 366 IPR001245 GO:0004672|GO:0006468
Cca09g02308 384 Gene3D Ribonuclease Inhibitor 33 196 IPR032675 -
Cca09g02308 384 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Cca09g02308 384 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 364 - -
Cca09g02308 384 PANTHER LRR RECEPTOR-LIKE KINASE 13 364 - -
Cca09g02308 384 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Cca09g02308 384 PRINTS Leucine-rich repeat signature 102 115 - -
Cca09g02308 384 PRINTS Leucine-rich repeat signature 147 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02308 Cca-Chr9 48348416 48355214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02308 32 360 Receptor kinase-like Gene Family AT5G65240 48.876 1.88e-102 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Cca09g02308 PK_Tyr_Ser-Thr 1.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02308 - - gmx:100800886 617.846