Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02306 ATGAAACGAAAGGGTGCGGCGGGACTGACGGGAGTGAGGAATTGGATGGTGGTGACGGAGACAGGGCAGAGACGGTTGGAGTGTGTTGGGAAGCACTCCATTATGCGCCGAACTGGGTTGCCGGCGCGTGACCTTAGGGTCCTCGATCCCATGCTGTCTCACCCTTCTTCCATCATGGGACGTGAAAGAGCCATCGTTCTCAACTTGGAACACGTCAAAGGCATCATCACTGCCTCCGAGGTTCTCATGATCAACTCCTCCAACCCTCTCTTTCTTCACTTCCTTCAACATCTTCTCTCTCGTCTTTCTCATCAAACTCCCTCTCCGATGAGCAATGACATGGATAGTGAAGCAAAACCTCGAGAGATGGGATCAGCTACGTTGCGCGGTGGTGAAGATTCCCAAAACGGTTTGCCTGTGGGAGTATCTGAGGAATCTGATGCAGTTCAAGCAAGAGTGGATAGCCCTAACCCTAAGATCAATGCAGAGATGTTAACAGGAACACTAGCTCCTAAACAGTTACCTTTTGAGTTCCTTGCACTTGAGACATGTATTGAATCTGCTTGCAGGTGCCTTGAATCTGAGACTTCAACATTGGAGGATGAGGCTTACCCAGCTTTAGATGAATTGACTTCTCAACTTAGCACTCTCAATCTTGAACGTGTAAGACAGATTAAGAGTCGTTTGGTTGCACTTTCCGGTCGTGTGCAAAAGGTAGCAGATGAACTAGAACATTTACTAGACGATGATAATGACATGGCTGAAATGTACTTGACACAAAAGCTTCAGGCTTCATTACAAGAAGAATTCAGTTCTGAATGTGAAGATGGCGATCAAAGTAATGAATCAAATTCGGAAAAGTTTGACAAATTCTCTGGCCTTAAACCTGACGTTGAGGAATTGGAGATGCTTCTAGAAGCATATTTTGCACAGACAAATGGAATCTTGCAAAGATTGTCTAGTTTGAGTGAGTACGTGGATAACACGGAGGACTACATCAACATAATGTTGGATGATAAGCAAAATCAGCTTCTGCAGGCATCAATAATTTTCAACACCCTAAACATGATACTTAGTGCAGGAATTGTGGTTGTAGGATTGTTTGGCATGAATATTCAAAACAAACTCTTCGATGGTGAACCTCGTCAATTTTGGGCAACAACCGGTGCTTCTCCACCACTCACACACATTCACTGTGCTCTCTCATTCTTTCATGACATGATCACCGCATGCAGAACTTCTTCAACCACCAACTTTGGAGGGCCTCAACCTCTTTCTCTGCGCTTCCTATCCAAACCAGCTTTtctatctctcaccctcttcttcccctctcactctcctctcAAGAGCATTGCGGTTTCCTCAACTCAGTGCAAACCAAGAATCCGGTGTCACAAAGAAGTAGGAAATGGTAATATTAATGATGGGGTAGATGAAGAGAAAGAGGAGGGTGAACGTGAGGTGCTGTGTGAGGTTCAAGTAGTTTCTTGGAGGGAAAGGAGAGTTAAGGCCGAAATTTCTGTCAATGCTGACATTGAATCCATTTGGAACGCTCTCACTGATTATGAGCATCTCGCTGATTTCATTCCAAATCTTGTCTGGAGTGGGAGAATTCCTTGCCCATATCCTGGACGGATATGGTTAGAGCAAAGAGGATTTCAAAGGTCAATGTATTGGCACATAGAAGCTCGTGTTGTGTTGGATCTTCAAGAATCTATCAATTCTGCATGGGATCGAGAACTCCACTTTTCCATGGTTGATGGAGACTTTAAGAAGTTTGAGGGCAAATGGTCCGTAAAATCTGGAATAAGATCTTCATCAACTAATTTATCTTATGAAGTTAATGTTATACCAAGATTCAATTTCCCAGCTATTTTGTTGGAAAGGATTATCAGATCAGATCTTCCTGTGAACCTCCGAGCCTTGGCATATAGAGTTGAAAGGAATATTTCAGGAAATCAGAAACTTTCCGTGCCAGAAAATCATTTGCATACAACTTCTAGTGATACTTATAGATCATCATCCAAAAAGATAAATGATTCTTTGAGTGAAAATAAAAAGTTGTCACCTGGAGAAAACAAAGAAGATTTGGCCAGCTCAATTTCTGGTTCCTTGTCCACGTCTTCTAGCGAGGTGAACATCAATAATTGGGGTGTGTTTGGAAAAACTTGCAGACTCGACAGGCCTTGTGTGGTGGATGAAATTCACCTCCGTAGATTTGATGGACTTTTGGAAAATGGAGGTGTTCATCGCTGCGTTTTTGCAAGCATAACTGTTAAAGCTCCTGTTCGCGATGTATGGAATGTCCTGTCTTCCTATGAGTCTCTTCCTGAGATAGTTCCAAATTTAGCGATCAGTAAGATTTTATCACGAGATAACAATAAAGTCCGCATTCTCCAGGAAGGGTGCAAGGGCCTGCTTTATATGGTGCTTCATGCTCGAGTTGTGCTAGACTTGTGTGAATATATAGAAGAGGAGATCAGTTTTGAACAGGTTGAAGGGGACTTTGATTCATTCCACGGAAAATGGACTTTTGAGCAACTAGGAAATCATCACACATTGCTAAAGTATTCAGTGGAATCAAAAATGCGCAAAGACACTTTCCTTTCTGAAGCTATCATGGAAGAGGTGTTTGTCAGTTAA 2643 0.4211 MKRKGAAGLTGVRNWMVVTETGQRRLECVGKHSIMRRTGLPARDLRVLDPMLSHPSSIMGRERAIVLNLEHVKGIITASEVLMINSSNPLFLHFLQHLLSRLSHQTPSPMSNDMDSEAKPREMGSATLRGGEDSQNGLPVGVSEESDAVQARVDSPNPKINAEMLTGTLAPKQLPFEFLALETCIESACRCLESETSTLEDEAYPALDELTSQLSTLNLERVRQIKSRLVALSGRVQKVADELEHLLDDDNDMAEMYLTQKLQASLQEEFSSECEDGDQSNESNSEKFDKFSGLKPDVEELEMLLEAYFAQTNGILQRLSSLSEYVDNTEDYINIMLDDKQNQLLQASIIFNTLNMILSAGIVVVGLFGMNIQNKLFDGEPRQFWATTGASPPLTHIHCALSFFHDMITACRTSSTTNFGGPQPLSLRFLSKPAFLSLTLFFPSHSPLKSIAVSSTQCKPRIRCHKEVGNGNINDGVDEEKEEGEREVLCEVQVVSWRERRVKAEISVNADIESIWNALTDYEHLADFIPNLVWSGRIPCPYPGRIWLEQRGFQRSMYWHIEARVVLDLQESINSAWDRELHFSMVDGDFKKFEGKWSVKSGIRSSSTNLSYEVNVIPRFNFPAILLERIIRSDLPVNLRALAYRVERNISGNQKLSVPENHLHTTSSDTYRSSSKKINDSLSENKKLSPGENKEDLASSISGSLSTSSSEVNINNWGVFGKTCRLDRPCVVDEIHLRRFDGLLENGGVHRCVFASITVKAPVRDVWNVLSSYESLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEYIEEEISFEQVEGDFDSFHGKWTFEQLGNHHTLLKYSVESKMRKDTFLSEAIMEEVFVS 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02306 880 MobiDBLite consensus disorder prediction 681 708 - -
Cca09g02306 880 PANTHER OS03G0837900 PROTEIN 452 877 - -
Cca09g02306 880 SUPERFAMILY Bet v1-like 501 649 - -
Cca09g02306 880 MobiDBLite consensus disorder prediction 657 676 - -
Cca09g02306 880 Gene3D Magnesium transport protein CorA, transmembrane region 147 344 - -
Cca09g02306 880 MobiDBLite consensus disorder prediction 270 291 - -
Cca09g02306 880 PANTHER POLYKETIDE CYCLASE / DEHYDRASE AND LIPID TRANSPORT PROTEIN 452 877 - -
Cca09g02306 880 Gene3D - 7 87 - -
Cca09g02306 880 CDD Mrs2_Mfm1p-like 15 391 IPR039204 -
Cca09g02306 880 CDD SRPBCC_11 502 648 - -
Cca09g02306 880 Pfam Polyketide cyclase / dehydrase and lipid transport 759 878 IPR005031 -
Cca09g02306 880 Pfam Polyketide cyclase / dehydrase and lipid transport 508 642 IPR005031 -
Cca09g02306 880 MobiDBLite consensus disorder prediction 105 138 - -
Cca09g02306 880 SUPERFAMILY Bet v1-like 754 863 - -
Cca09g02306 880 Gene3D - 753 880 IPR023393 -
Cca09g02306 880 Gene3D - 501 651 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02306 Cca-Chr9 48285916 48294893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02306 15 391 MRS2 Gene Family AT3G19640 47.332 1.39e-109 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02306 - - gmx:100797103 819.305