Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02300 ATGGGCGACGGAAGTGGGAGCCGGGGGAACAGGGCGGAGTGGGTGCAACAGTACGATCTCCTCGGCAAGATCGGGGAAGGCACGTACGGCCTCGTCTTCCTCGCCAGAACCAAATCTCCTTCTCCCTCCAAATCCATTGCCATCAAAAAGTTCAAGCAATCCAAGGACGGCGACGGCGTTTCCCCTACCGCCATCCGCGAAATCATGGTAACCGAACCTAACCTAACCTCTTCCGTTGCGTTTCCTTTCGGTGTCAATTTTTCCTCACTCTTTCTTTTATTGCAGTTGTTGAGGGAGATAGCGCACGAGAACGTCGTGAAGCTCGTCAATGTCCATATCAACCACGCTGACATGTCGCTCTACCTCGCTTTCGATTACGCCGAGCACGATCTCTATGAAATTATTAGGCACCATAGAGACAAACTCAACCATTCCATTAATCAGTACACTGTTAAGTCCTTGCTCTGGCAGCTGCTCAATGGATTAAGCTATTTGCACAGTAATTGGATGATACATCGAGATTTGAAGCCGTCGAATATACTGGTTATGGGTGAAGGAGAGGAACATGGGGTTGTGAAGATTGCTGACTTCGGACTTGCAAGGATATACCAAGCTCCTCTGAAGCCGTTATCTGAGAATGGTGTTGTTGTAACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGTGCAAAACATTATACCAGTGCTGTCGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGGGCAGAAGTCAAAGCCACATCAAATCCCTTTCAGGTACATATAACTATATCACAGGACATTGTTACTGTGCCAGGCCATCCCACAATAGAAAAGTGGCCTTCCTTAACAAGTCTTCCACATTGGCAACAAGATGTGCAACATATACAAGGACACAAATATGACAACACTGGTCTCTATAATGTTGTGCACCTATCTCCAAAAAGTCCTGCATATGACCTTTTATCAAAGATGCTCGAATATGATCCTCGTAAGCGTATAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCATTACCTGGACGGAATGCACTTGTACCCTGTCAACTTGGAGAGAAAATTGTCAATTATCCCACTCGGCCAGTGGACACCACAACTGATCTTGAGGGGACAACCAATATGCCACCTTCACAAACGGTAACTGCAGTTTCTGGCATGCCTGGCAGCCATGGGAGATGGAATGAATCCTGGGGGTATCTCAAAGCAACGAGGTGTTCCACAGGCCCATCAACCGCAACAGTTGAGAAGGAAAGATCAAATGGGGATGCCAGGATACCCTGCACAACAGAAGTCGAGACGATTATAAGGTTTCTGCTGGAAGAGAGACAAAGTGAAGATAGATTTGGGGTCGATACTTCAGTATCAAACTCATGCGGGACATTTTTGGACAGAGTTTGCCTTCAATACTTGTAG 1476 0.4648 MGDGSGSRGNRAEWVQQYDLLGKIGEGTYGLVFLARTKSPSPSKSIAIKKFKQSKDGDGVSPTAIREIMVTEPNLTSSVAFPFGVNFSSLFLLLQLLREIAHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKLNHSINQYTVKSLLWQLLNGLSYLHSNWMIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATSNPFQVHITISQDIVTVPGHPTIEKWPSLTSLPHWQQDVQHIQGHKYDNTGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQLGEKIVNYPTRPVDTTTDLEGTTNMPPSQTVTAVSGMPGSHGRWNESWGYLKATRCSTGPSTATVEKERSNGDARIPCTTEVETIIRFLLEERQSEDRFGVDTSVSNSCGTFLDRVCLQYL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02300 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Cca09g02300 491 Pfam Protein kinase domain 95 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02300 491 SMART serkin_6 18 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02300 491 Gene3D Transferase(Phosphotransferase) domain 1 125 371 - -
Cca09g02300 491 ProSitePatterns Protein kinases ATP-binding region signature. 24 50 IPR017441 GO:0005524
Cca09g02300 491 Gene3D Phosphorylase Kinase; domain 1 86 124 - -
Cca09g02300 491 ProSiteProfiles Protein kinase domain profile. 18 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02300 491 MobiDBLite consensus disorder prediction 387 410 - -
Cca09g02300 491 Gene3D Phosphorylase Kinase; domain 1 8 77 - -
Cca09g02300 491 MobiDBLite consensus disorder prediction 387 406 - -
Cca09g02300 491 PANTHER CYCLIN-DEPENDENT KINASE E-1 8 407 - -
Cca09g02300 491 SUPERFAMILY Protein kinase-like (PK-like) 14 356 IPR011009 -
Cca09g02300 491 CDD STKc_CDK8_like 17 355 - -
Cca09g02300 491 PANTHER CELL DIVISION PROTEIN KINASE 8 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02300 Cca-Chr9 48215119 48227468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02300 1 417 Core Cell Cycle Gene Families AT5G63610 72.600 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Cca09g02300 Pkinase 2.1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02300 K02208 - gmx:100807993 712.605