Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02298 ATGGGCCGAGAAAATGCATCACCAATGGCAAAGGAACAAGTCAGTGATGATAGTTCCTCGAGTGTTGCGAATGGGGATTTAGAATCTCATGCTCGACTTAGTTTGGACAAGGAGACGGGTTTGGGAGGTTGTCGTGTGTGCCAATGTACTGAATCAGATAAAAGGGCAGATGCTGCACTAGAATTTTTGGGCATCACTCCAGATTCAGAAATGTGTAAAAGCAAAGGGGAAGTAGGGTCTGATGGAAATGGAATCCCCAAAAATGTGTCTCTTAACAGAAATGTTGAAAAAAATACTGGGATGGTGGAGTTTGTAAGCCCTGATGGGGAGGTTTTCATTTGTAAAAGCGATTTGGAACTTGGTTTGTCTCATCAAGATAAATTAGTTGAACTTGGATGTTGTTGTAAAAATGACCTTGCTTTAGTACATTATGCATGTGCACTCAAGTGGTTTGTCAACCATGGATCTACCATTTGTGAAATATGTGGACATATAGCAAATAATATCAGAATCTCTGACTTCAATAAGGTTGTTGGTGCTTTGAAGGAGTATGAAGTATTGAGGGAAAGAACTGCGAGTGGGGATCCTGGTCCTGCACAAGTTCAGGCAAGTGCTGCTGTGGATCCTGATGCTGTGGCTGCTATCCGGAGGCAAAGGCTAAGTGAGATTGCACTATGGTTTTGTCCTCATAATAATATCAGTAACAATAACAACAATAGCAATGTGGACACAGTTTCACAGGTTGTTGCTGACCAGCCTTTGAGTATTGTTACTGAAGATGCTGGCCCCATACAGAATCCTGCAACTAAGTGGGCTGTAGAGGGTACGGGGATCCTGCTTGCTACGGGTTTGCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGAAAGAAAACTGCTAAAAGTGGTCTTCATATCTTACTAGGAGGTGTTTGTGCTTTAGCCGTGGTGGTTTTCTTCCGCTTTTTCGTGCTTACGAGAATCAAGTATGGACCTGCACGTTATTGGGCAATATTGTTTGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCAAGGACCCATGGTGCCCATACAACATGA 1089 0.4307 MGRENASPMAKEQVSDDSSSSVANGDLESHARLSLDKETGLGGCRVCQCTESDKRADAALEFLGITPDSEMCKSKGEVGSDGNGIPKNVSLNRNVEKNTGMVEFVSPDGEVFICKSDLELGLSHQDKLVELGCCCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRISDFNKVVGALKEYEVLRERTASGDPGPAQVQASAAVDPDAVAAIRRQRLSEIALWFCPHNNISNNNNNSNVDTVSQVVADQPLSIVTEDAGPIQNPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTAKSGLHILLGGVCALAVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02298 362 MobiDBLite consensus disorder prediction 1 24 - -
Cca09g02298 362 Pfam RING-variant domain 128 162 IPR011016 GO:0008270
Cca09g02298 362 PANTHER ZINC FINGER, RING-CH-TYPE 10 361 - -
Cca09g02298 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 172 IPR013083 -
Cca09g02298 362 SUPERFAMILY RING/U-box 126 165 - -
Cca09g02298 362 ProSiteProfiles Zinc finger RING-CH-type profile. 103 169 IPR011016 GO:0008270
Cca09g02298 362 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 10 361 - -
Cca09g02298 362 SMART ringv_2 113 163 IPR011016 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02298 1 352 C3H Transcription Factor Family AT5G08750 63.435 6.34e-153 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02298 - - gmx:100805323 582.408