Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02297 ATGAAAAGCCTCTGTCTTGGGCCGTTCCTTGCTGCTAGTGCTCCGGTTGATAGAAGAGCATTTGGAGGTCATTTAACCAGAAAGTGCTTTCAAAACCAACTTCACTTCCGATCAAGTTGTGTTGTTTTCTCTTCATACTCATGTTCTGCAACTCTATCAGTGGTGCCAGAAGTAGAAGAGAAGCAAGTATTTGATGGTGAGGAGGCTAATTTGCTCGTTAGAGAGCTCAGAAAGAGCTTTGATTCAGGCAGGACAAAGAGCTATGAATGGAGGGTTTCCCAGTTGGAGGCCATAGCTAGGATGTTAGAAGAGAAAGAGAAGGAAATTACTGAAGCTCTTTATGAGGACCTTTCTAAACCTCAATTTGAAGCATTTATAGCCGAGGTTGCCCAGGTAAAATCCGCATGTAGTGAAGCACTTCAAGAGCTGAAGCACTGGATGAAGCCTGAAAAGGTGAATACTTCAATCACAACATTTCCATCATCTGCCGAGATTGTGCCAGAACCACTGGGGGTTGTGTTGGTCATCTCAACATGGAACTTTCCTTTCTTGTTATCAATGGATCCAGTCATTGGAGCCATTTCTGCGGGTAATGCAGTGGTCCTAAAACCATCAGAAATTGCTCCAGCAACATCATCACTGCTTGCAAATTTGATTGAACAATATCTAGACAGCTCTGCCATAAGAGTTGTTGAAGGGGCTATTCCTGAAACAACTGCACTCCTGGACCAGAAGTGGGATAAGATACTTTACACAGGTAGTGCTAGAGTAGGTCGCATTGTCATGGCTGCTGCTGCAAAGCATCTTACACCAGTGATTCTGGAACTTGGAGGAAAGTGCCCAGCTGTTGTTGAATCAGATGTCAACTTACAAGTTACTGCTAGGAGGATTATAGCTGGCAAGTGGGCATCCAATAGTGGACAAGCATGCATTTCTGTTGATTATATCATCACAAGAAAAGAATTTGCTCCAAAGCTGATAAGTGCCTTGAAAGAAGAACTGGAACAATTTTTTGGGAAAGATCCTATGGAGTCAAAAGACATGTCACGAATTGTGTCTCCAAACCAGTTTGCACGGCTTGTGAATCTCTTGGATGAGGATAAGGTGTCTGACAAAATTGTGTTAGGAGGTCAGAGGGATGAGAAGAAATTAAGGATTGCCCCAACTATCGTATTGGATGTTCCTGAAGATGCTATGGTAATGCAGGAAGAGATATTTGGGCCAATATTGCCAATCATCACTGTAGATAACATAGAAGACTGCTACAGTATAATCAAATCAAAGCCAAAACCTCTTGCTGCATATCTCTTCACAAACAATGAGCAGCTGAAGAAGGATTATGTGGAAAAGATATCTTCTGGAGGGATGCTCATCAATGACGCTGTCATCCATGTTGCTACTCGTGGTTTGCCTTTTGGAGGAGTTGAAGAGAGTGGAATGGGTTGTTACCATGGAAAATTCTCTTTTGATAGTTTCAGCCACAAGAAGGCAGTTCTCTACAGAAGTTTTGATGCAGATTCATCCGTAAGGTACCCTCCGTATACACCTCAGAAGGAAAAATTATTGAAGGCCTTAATTAGTGGCAATATTGTTCAAATAATTCTTACTCTTTTTGGATGGTCTTAA 1626 0.4213 MKSLCLGPFLAASAPVDRRAFGGHLTRKCFQNQLHFRSSCVVFSSYSCSATLSVVPEVEEKQVFDGEEANLLVRELRKSFDSGRTKSYEWRVSQLEAIARMLEEKEKEITEALYEDLSKPQFEAFIAEVAQVKSACSEALQELKHWMKPEKVNTSITTFPSSAEIVPEPLGVVLVISTWNFPFLLSMDPVIGAISAGNAVVLKPSEIAPATSSLLANLIEQYLDSSAIRVVEGAIPETTALLDQKWDKILYTGSARVGRIVMAAAAKHLTPVILELGGKCPAVVESDVNLQVTARRIIAGKWASNSGQACISVDYIITRKEFAPKLISALKEELEQFFGKDPMESKDMSRIVSPNQFARLVNLLDEDKVSDKIVLGGQRDEKKLRIAPTIVLDVPEDAMVMQEEIFGPILPIITVDNIEDCYSIIKSKPKPLAAYLFTNNEQLKKDYVEKISSGGMLINDAVIHVATRGLPFGGVEESGMGCYHGKFSFDSFSHKKAVLYRSFDADSSVRYPPYTPQKEKLLKALISGNIVQIILTLFGWS 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02297 541 Coils Coil 92 115 - -
Cca09g02297 541 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 3 MEMBER I1, CHLOROPLASTIC 42 541 - -
Cca09g02297 541 PIRSF ALDH 53 537 IPR012394 GO:0006081
Cca09g02297 541 PANTHER ALDEHYDE DEHYDROGENASE 42 541 IPR012394 GO:0006081
Cca09g02297 541 SUPERFAMILY ALDH-like 68 514 IPR016161 GO:0016491
Cca09g02297 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 278 478 IPR016163 GO:0016620
Cca09g02297 541 Pfam Aldehyde dehydrogenase family 65 498 IPR015590 GO:0016491
Cca09g02297 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 77 496 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02297 Cca-Chr9 48192333 48197480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02297 12 541 Aldehyde Dehydrogenase Gene Family AT4G34240 65.226 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02297 K00128 - gmx:100800699 986.867