Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02295 ATGCAAGGTGAATTGCAGTTACCACCCGGCTTCAGATTCCACCCCACCGATGATGAGCTCGTCCATCACTACTTGTGCAGGAAGTGTGCTGCACAACCCATTGCTGTGCCCATCATCAAAGAAATTGATTTGTACAAGTTTGATCCATGGCACCTTCCAGAAATGGCTCTTTACGGTGAGAAGGAGTGGTACTTTTTCTCTCCAAGGGACAGAAAATACCCAAACGGCTCACGACCCAACCGGGCTGCCGGAACCGGATACTGGAAAGCCACCGGAGCCGACAAACCCATCGGAAAACCCAAAGCCCTTGGAATCAAGAAGGCCCTTGTCTTCTACGCGGGCAAAGCCCCTAAAGGAGTCAAAACCAATTGGATCATGCACGAATATCGCTTAGCCAACGTCGACAGATCCGCATCcaagaaaaacaacaacaacaacaacaacTTAAGGCTTGACGATTGGGTGCTGTGCCGAATTTACAACAAGAAAGGGAAGATCGAGAGGTACAATGGCGTTGCGGTGGTGGATCAGAAAGTAGAAAAATTTTCAGATGAAGAGGTTCAGTTCCACCACGAGACCAAGCCTGAGATTAACCATGATTTCAGGAGCCACCAATTGTACACGGACACGTCGGATTCGGTGCCCCGCTTGCACACGGACTCCAGCTGCTCCGAGCACGTGGTTTCGCCGGATGCCACGTGCGACAAGGAGGTGCAGAGCGAGCCCAAGTGGAACGACCTCTTCTTGGGCCCCGACCCAGTTTCGGCCTTCGATTTTCAGTTCAATTTCATGGACCTCTCGTCGGATGACCCTTTTGCCCCGCAGGCCCAGTACCAAATGAACCACCTCTCGCCGTGGCCGGAGATGTTCTCGTACCTACCCAAGACATTCTGA 894 0.5078 MQGELQLPPGFRFHPTDDELVHHYLCRKCAAQPIAVPIIKEIDLYKFDPWHLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNNNNNLRLDDWVLCRIYNKKGKIERYNGVAVVDQKVEKFSDEEVQFHHETKPEINHDFRSHQLYTDTSDSVPRLHTDSSCSEHVVSPDATCDKEVQSEPKWNDLFLGPDPVSAFDFQFNFMDLSSDDPFAPQAQYQMNHLSPWPEMFSYLPKTF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02295 297 ProSiteProfiles NAC domain profile. 7 162 IPR003441 GO:0003677|GO:0006355
Cca09g02295 297 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 273 - -
Cca09g02295 297 PANTHER NAC TRANSCRIPTION FACTOR 56 5 273 - -
Cca09g02295 297 Gene3D NAC domain 16 167 IPR036093 GO:0003677|GO:0006355
Cca09g02295 297 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Cca09g02295 297 SUPERFAMILY NAC domain 3 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02295 Cca-Chr9 48180244 48182043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02295 1 297 NAC Transcription Factor Family AT1G01720 62.583 1.57e-123 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca09g02295 NAM 4.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02295 - - gmx:100170751 539.265