Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02288 ATGGCGAACAAGACGAAGAAAGCAATGAGCCTCAACGATAGTCACTATCGCTTCCTCCAAGATCACTCTGCTCCTCCCAAGCCCTCTTTCGATGAATCCTCCACCACAAACCAACAACACCAAAACATCCCTCACTTTTCCATAATCACCGATTTTGATTCTCCAATCGGGTTCAACACGGACGAACCAAACAAGGAACAACAACAAGCTTCATCCAACGATGTTCCCCATCTTTATGTTCAATCTTCCGCTACTCCTAGGCAAAATTCGGATGAGAAACACGAACCGATCAAGCTTCAAGAACAACAAGAAGCTCCACCTCACGTGGCTATTTCTTACCCTAAGGAAGAAAAGAAGACGAAGGTGAAAGTGCAGGGGCGACGCCGCCTCTGCAAGGTTGTGCATGAAGATGCCAGCAAAAGTGTGGCAGTTGATGAGTCCAAGTTTGATGAACTCATCGACCTTGATTCGCCGGTTCCGGGCCCGAGGAACACAATCCAGATTGAGGAGAGTGGGGGCAAGAACGAAATTAGGGATATTTTGAATGAATTGAACTCCAAGTTTGAGTTGTTATCGGTTGAGAGGAAGCCGGCTCCGAAGCGTGTTGAGGGTTTGGTTGGAGGGAAAGAAAGTTGTGATGACGAGGGTTTAGAGTATGGGAGTGCAGGGTCTTCGTTCTCTCAACCACAGGAGAGCTTGTCAGAGGGTGCTAAGAATGATGGGAGTGGCGGTATTGAGTATGATTCAGATGACTCTGTTCAAGAGGTGGATCATTTTGAGCCTGAGAATGATGGGTCTATAACTTTGACTGGCCCCAGATCGACTTACAAGTTGCAGGCTAAAATTGCAAAAATGTTGTATCCGCATCAGCGGGAGGGATTGAAGTGGCTCTGGTCTTTGCATTGTCTGGGAAAAGGTGGAATCTTGGGGGATGACATGGGTTTGGGGAAAACAATGCAGATGTGTGGCTTTCTAGCTGGACTCTTTCATTCTCGTTTAATTAGAAGGGTATTGGTTGTAGCACCGAAAACCTTATTGCCACATTGGATTAAAGAATTGGCAGCTGTTGGTCTATCCGAGAAGACAAGAGAATATTTTGGAACTTCTACGAAACTCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTACGGGGGGATAATTATTTTGATGACGATGAAAGTGAAGATGGCACTACATGGGACTACATGATACTTGATGAAGGGCACCTTATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATTAGTGGCACGCCTTTGCAAAATAATTTGAAGGAGTTGTGGGCATTGTTCAATTTCTGTTGCCCAGAGTTACTTGGTGACAACAAATGGTTCAAAGAAAAATTTGAGACACCCATACTTCGTGGAAATGACAAAAATGCTTCTGACAGGGAGAAGCGTATTGGTTCATCTGTAGCAAAGGAACTAAGAGATCGTATTCAGCCTTACTTTTTGAGACGTTTGAAGAGTGAGGTTTTCAGTCAAGATGACGAGCAAACATCTGCAAAGCTTTCTCAGAAACAAGAGATCATTGTGTGGCTTCGACTGACCAGTGTTCAGCGGCATCTTTATGAAGCATTTTTAAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCGCTGGCTGCCCTTACTATTTTGAAGAAAATATGTGATCATCCGCTTCTGTTGACAAAGCGAGCAGCTGAGGATGTGTTGGAAGGCATGGAGTCAATGCTAAAGCCAGAAGAGGCTAATGTTGCAGAAAAATTGGCAATGCACATAGCAGATGTTGCAGACACAGATAAGTTTAAAGATGAGCAAGATGTGTCATGCAAAATTTCCTTCATTATGTCATTATTGGATAAGTTGATCCCAGAAGGGCATAGTGTGCTTATATTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGTCTACTATATAAAGGTTATGACTTTTTACGAATTGATGGCACAACAAAAGCCAGTGACAGACTACAAATTGTTAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACATCTCAGGTTGGTGGTTTAGGATTAACACTTACAAGAGCAGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGCGTTGACCGTGCATATCGAATTGGTCAAATGAAAGATGTTATTGTATATAGATTGATGACATGTGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAGGGAGGATTATTCAAAACTGCTACTGAACATAAAGAACAAATTCGGTACTTTAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACTCAAAGGCAATTGAATGAGGAGCACGATCGTCAATACACAGTTGATGACTCTTTCAAAGCACATATAGAGTTTTTGAAAAGTAAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCCAAGACAGCGCCAGTTCGAGCTGATCCTGAGGATAGGAATCATGGAACTAAATATATTGGAACTTCAAGATCATCTTCAAATGAGCATATTGCTGATGGGACCGAGTTTGCATTTAATCCTAAGGATGTTAGGACCAACAAAAAGAGTTATTCTCCTAGCAGTGCTGGTAAATTGACTGAGTCAGAAATCAAGGATAAAATTAATCGCTTCTCTCAAACACTGTCAAATACGGCGCTGATTTCTAGATTACCTGACAAGGGAGAGAAACTACAGAAACGGCTTGTGGAGCTGAATTTAGAGCTCGCTGAACTCGAGAGGGGAGAAACAAATGTAGTTGATTTGGATGATTTTACCACTGAATTTCAACGGGTGTTAAATGTATAG 2967 0.421 MANKTKKAMSLNDSHYRFLQDHSAPPKPSFDESSTTNQQHQNIPHFSIITDFDSPIGFNTDEPNKEQQQASSNDVPHLYVQSSATPRQNSDEKHEPIKLQEQQEAPPHVAISYPKEEKKTKVKVQGRRRLCKVVHEDASKSVAVDESKFDELIDLDSPVPGPRNTIQIEESGGKNEIRDILNELNSKFELLSVERKPAPKRVEGLVGGKESCDDEGLEYGSAGSSFSQPQESLSEGAKNDGSGGIEYDSDDSVQEVDHFEPENDGSITLTGPRSTYKLQAKIAKMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGFLAGLFHSRLIRRVLVVAPKTLLPHWIKELAAVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGDNYFDDDESEDGTTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFETPILRGNDKNASDREKRIGSSVAKELRDRIQPYFLRRLKSEVFSQDDEQTSAKLSQKQEIIVWLRLTSVQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMESMLKPEEANVAEKLAMHIADVADTDKFKDEQDVSCKISFIMSLLDKLIPEGHSVLIFSQTRKMLNLIQECLLYKGYDFLRIDGTTKASDRLQIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQMKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQYTVDDSFKAHIEFLKSKGIAGVSHHSLLFSKTAPVRADPEDRNHGTKYIGTSRSSSNEHIADGTEFAFNPKDVRTNKKSYSPSSAGKLTESEIKDKINRFSQTLSNTALISRLPDKGEKLQKRLVELNLELAELERGETNVVDLDDFTTEFQRVLNV 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02288 988 MobiDBLite consensus disorder prediction 221 237 - -
Cca09g02288 988 Gene3D - 545 841 IPR027417 -
Cca09g02288 988 Gene3D - 269 544 IPR038718 -
Cca09g02288 988 MobiDBLite consensus disorder prediction 202 216 - -
Cca09g02288 988 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 473 IPR014001 -
Cca09g02288 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 523 IPR027417 -
Cca09g02288 988 SMART helicmild6 672 755 IPR001650 -
Cca09g02288 988 Pfam SNF2-related domain 289 593 IPR000330 GO:0005524|GO:0140658
Cca09g02288 988 Pfam Helicase conserved C-terminal domain 643 755 IPR001650 -
Cca09g02288 988 PANTHER OS04G0692700 PROTEIN 255 866 - -
Cca09g02288 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 538 819 IPR027417 -
Cca09g02288 988 MobiDBLite consensus disorder prediction 27 48 - -
Cca09g02288 988 CDD SF2_C_SNF 635 766 - -
Cca09g02288 988 Coils Coil 948 968 - -
Cca09g02288 988 MobiDBLite consensus disorder prediction 60 87 - -
Cca09g02288 988 MobiDBLite consensus disorder prediction 202 249 - -
Cca09g02288 988 MobiDBLite consensus disorder prediction 1 118 - -
Cca09g02288 988 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 646 805 IPR001650 -
Cca09g02288 988 MobiDBLite consensus disorder prediction 869 890 - -
Cca09g02288 988 SMART ultradead3 281 484 IPR014001 -
Cca09g02288 988 PANTHER SNF2/RAD54 FAMILY MEMBER 255 866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02288 Cca-Chr9 48118787 48127012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02288 286 809 RAD5 or RAD16-like Gene Family AT1G02670 24.956 5.39e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca09g02288 SNF2_N 3.9e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02288 K20093 - gmx:100779283 1673.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02288 09 48118787 48127012 Cca09g02288 09 48118787 48127012 ECH