Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02276 ATGGATCCAGATGAGAGCCATGGCACTTTGCCAAATGGATTCAACACAGGAAGCCCCGAAAGCCCTTGCTTAAAGacaagcaccaacaccacccccaccacacacaacaacaacaacaaAGAAATGGACCGTTTTCTCCCTATAGCCAACGTTGGAAGAATCATGAAAAAAGTGATTCCCCCAAACGGGAAAATCTCCAAGGACGCAAAGGAAACAGTTCAAGAATGTGTGTCCGAGTTCATTAGCTTTGTCACCGGGGAAGCCTCCGACAAATGCCAAAGAGAAAAGAGAAAAACCATCAATGGTGAAGATGTCATATGGGCCATCACTACCTTAGGGTTTGAGGATTACGTGGAACCCTTAAAATCTTATCTTCAGAAATATAAAGAGATTGAAGGAGAAAAACTTAATATTCCAAAGCAACTACGTTCTGAACAAAGGCTACAACACCACCCCCATAATAGTAATCAAGACGAAAATAATCAAACATTCAATGGTGCATATGCATCAACAAATCTCATTTCTCAACCTCCCTATGTCGCCTCTGATCAGAAGTTTTCATCACTACCCTTCTCTCCAAACTCGATTCAGAGTCAGCTACGGCAGCAAGATCAGATTGATTCAGTGGGCCACTGGTACGAATAA 645 0.3938 MDPDESHGTLPNGFNTGSPESPCLKTSTNTTPTTHNNNNKEMDRFLPIANVGRIMKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGEDVIWAITTLGFEDYVEPLKSYLQKYKEIEGEKLNIPKQLRSEQRLQHHPHNSNQDENNQTFNGAYASTNLISQPPYVASDQKFSSLPFSPNSIQSQLRQQDQIDSVGHWYE 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02276 214 MobiDBLite consensus disorder prediction 1 40 - -
Cca09g02276 214 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Cca09g02276 214 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Cca09g02276 214 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
Cca09g02276 214 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 207 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca09g02276 214 MobiDBLite consensus disorder prediction 145 164 - -
Cca09g02276 214 ProSitePatterns NF-YB/HAP3 subunit signature. 76 92 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cca09g02276 214 Gene3D Histone, subunit A 32 172 IPR009072 GO:0046982
Cca09g02276 214 SUPERFAMILY Histone-fold 43 146 IPR009072 GO:0046982
Cca09g02276 214 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 5 207 - -
Cca09g02276 214 MobiDBLite consensus disorder prediction 9 40 - -
Cca09g02276 214 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 45 109 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02276 Cca-Chr9 47999309 48000376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02276 3 212 CCAAT-HAP3 Transcription Factor Family AT2G13570 58.296 1.31e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca09g02276 CBFD_NFYB_HMF 3.2e-27 CL0012