Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02271 ATGCAAAGCTGTGAGGTTGAGGCCATTGGCATAAACTACACGATCCACACACACAAATCGGAGCACCCTTTTAAAATCTTCAGCAAACCTGAACAACTTGACACTAAACAAGTTGGTAGAGAGGAAGCAAAAGCAGAAGCTGAAGAAAGTTGCAGTGGTGTAAGGCATGTGCTGAAGAATGTGAGTTTCCAAGCCAAGCCATGGGAGATCCTAGCAATTGTAGGGCCAAGTGGAGCTGGCAAATCATCACTTCTTGAGATTCTTGCTGGCAAACATAGTCCTCAAAGTGGGACTGTGTTGGTGAACCACAAACCTGTGGACAAAGCTCAGTTCAGGAAGCTTTCAGGGTATGTTACACAAAAGGACACTTTGTTTCCTTTACTTACAGTTGAAGAAACCCTGATGTTTAGTGCAAAGCTGAGGCTGAAGCTTCCTCAGGAGCAACTTTGCTCCAGGGTCAAGTCACTCATTAAGGAGCTTGGACTTGACCATGTTGCTGGCACTAGAATTGGTGATGATAGGGTCCGAGGCATATCTGGTGGTGAGAGGCGCAGAGTTTCCATTGGTGTTGAAGTCATACATGATCCAAAAGTGCTGGTTCTTGATGAACCAACTTCAGGGCTTGACAGTACTTCAGCTTTGCAAATAATTGACATGCTTAAGGTCATGGCTGACACCAGAGGTAGGACTATAATCCTCAGTATCCACCAACCCGGATTCAGAATAGTGAAGCTGTTCAATTCATTGTTGTTGTTGGCCAATGGAAGTGTCTTGCACCATGGAACTTCTGATTTGCTTGGTGTGAATCTAAGGCTGATGGGTTTGGAGCTTCCCCTTCATGTCAATGTGGTTGAGTTTGCCATTGAGTCCATTGATACCATTCAGCTACAACAGAAATGTGAGCCAGTTCAAGTAGAAACTCCAAGGCAACTAATGCAACTGAAGAAAGGTGATGATGAAGCAGGCGAGAGTAGGAATGGTAAGTTTACTTTGCAACAGCTGTTTCAGCAATCCAAGGTAATTGATGAAGAAACCATCTATGATGCTGGAATGGATTTCACTTGTGATTTTGCTAATTCTAGATTGAGAGAAACTATGATTCTCACTCATAGGTTCTCCAAGAACATATTTCGTACAAAAGAGCTATTTGCATGCAGGACAATTCAAATGCTGGTTTCTGGGCTGGTTTTAGGGTCCATCTTTTGTAACCTTAAGGATGATCTAGAGGGAGCTTTGGAAAAGGTGGGTCTATTTGCTTTCATATTAACGCTTTTGTTGTCAAGCAGTGTAGAAGCTCTACCAATTTTCCTGCAAGAAAGGGAGATTCTAATGAAGGAAACATCTTGTGGAAGCTACCGTGTGTCATCCTATGCTATTGCCAATGGCCTAGTTTACTTGCCATTTCTTCTCATCCTAGCCATTTTGTTCGCAATGCCCTTGTATTGGCTTGTTGGACTTAACCGGAATTTCTTGGCCTTTTTGCACTTTCTGTTGCTGATATGGTTGATCCTTTACACGGCCAATTCAGTTGTGGTGTGTTTCAGTGCTCTAGTGCCTAATTTTATTGTTGGGAATTCAGTGATTTCTGGTGTTATAGGGTCATTCTTCTTGTTCTCTGGGTACTTCATATCAAAGAATGAAATTCCAAATTACTGGATTTTCATGCATTATATATCCTTGTTTAAGTATCCCTTTGAAGGGTTCCTGATCAATGAGTTCTCCAACTCGGGGAAGTGCTTGGAGTACTTGCTTGGGGCATGTGTGAAGAGTGGAGAGGATGTGCTTAGAGAAGAAGGGTATGGGGGAGAGAGTAACAGATGGAAGAATGTTGGGGTCACTGTGTGCTTCATCATGGTTTACAGGTTCATTTCTTATGTTATTCTTAGATACAGATGTTCACAGAGGGGGTTTGCCAGGGTTGTCACCAACTAA 1932 0.4281 MQSCEVEAIGINYTIHTHKSEHPFKIFSKPEQLDTKQVGREEAKAEAEESCSGVRHVLKNVSFQAKPWEILAIVGPSGAGKSSLLEILAGKHSPQSGTVLVNHKPVDKAQFRKLSGYVTQKDTLFPLLTVEETLMFSAKLRLKLPQEQLCSRVKSLIKELGLDHVAGTRIGDDRVRGISGGERRRVSIGVEVIHDPKVLVLDEPTSGLDSTSALQIIDMLKVMADTRGRTIILSIHQPGFRIVKLFNSLLLLANGSVLHHGTSDLLGVNLRLMGLELPLHVNVVEFAIESIDTIQLQQKCEPVQVETPRQLMQLKKGDDEAGESRNGKFTLQQLFQQSKVIDEETIYDAGMDFTCDFANSRLRETMILTHRFSKNIFRTKELFACRTIQMLVSGLVLGSIFCNLKDDLEGALEKVGLFAFILTLLLSSSVEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFAMPLYWLVGLNRNFLAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVIGSFFLFSGYFISKNEIPNYWIFMHYISLFKYPFEGFLINEFSNSGKCLEYLLGACVKSGEDVLREEGYGGESNRWKNVGVTVCFIMVYRFISYVILRYRCSQRGFARVVTN 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02271 643 PANTHER ABC TRANSPORTER G FAMILY MEMBER 5 2 631 - -
Cca09g02271 643 Pfam ABC transporter 58 206 IPR003439 GO:0005524
Cca09g02271 643 Pfam ABC-2 type transporter 365 573 IPR013525 GO:0016020|GO:0140359
Cca09g02271 643 Gene3D - 41 308 IPR027417 -
Cca09g02271 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 264 IPR027417 -
Cca09g02271 643 CDD ABCG_EPDR 52 261 - -
Cca09g02271 643 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 33 279 IPR003439 GO:0005524
Cca09g02271 643 ProSitePatterns ABC transporters family signature. 178 192 IPR017871 GO:0005524
Cca09g02271 643 SMART AAA_5 67 256 IPR003593 -
Cca09g02271 643 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02271 Cca-Chr9 47933933 47936406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02271 57 290 Calmodulin-binding Proteins AT2G36910 27.236 1.04e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02271 K05681 - gmx:100789722 1123.61