Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02265 ATGAACGAATCTCAAAACACCATTCCCCACTTGTTCAGATGCCCCATCAGTTTAGACTTGTTGGAAGATCCTGTGACTTTATGCACAGGCCAAACCTATGACAGGTCAAACATAGAAAAATGGTTTGCTTCAGGTAACCTCACATGTCCAGTTACAATGCAAAAACTCCATGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTTCAATTTGACCCTGGCAACTCTGAAATCCCAACTATTGACTCCTTAGCTTCTCTGAAACGCAACCTTGAATCCCATGAAACCAGCTTAGAAAACAAGCTCCAAGCGCTTAGAAAAATCAGTCTCTTATCTGATGAGTATTGTTCCTTTAACAAATCATGCTTCCTCCAATTGGATTTCCTACCACTGCTTTTGGAACTAGTCTTCGGAACTCAAGTGTCAAAAAATGACATGAACCTCATAGAGCTAGGACTTTGTTGCATTAGAAAATTGTTGCCCCTTGGTAGTTCGGAGCCTCTAAATGTGATCAAAGATGGGTCTAAATTATCAAGTTTTGTGCTATTATTTGAAAAGGGTACTAACTCGGTTAAGTCCAGCTTGTGCCGTGTCATAGAGTCAGCATCATCAACATCTGACACACAAGATTTATGTTCAATTCTCGGAAACTCCCACAAACTAGTGCACGAGATTGTTCATGTTGTTAACCAAAATTACGAGGTTTCTGTGGATGCAATTAAAGCCATGTCAGCACTATGTTCGATGCAATCTAACAGAGAGAGTTTGGTGAGAGGAGGAGCAATAGAGGAAATTATAAGGTACATTTCATCATCAGAAAGAAGAGACTTGGCACCAGTGGCTATGAGAATTGTCGAAAAACTTGTGGATCTGAAAAGTGCTAAAGAGGCATTGGTGAATCAGCCTGGTGGTGTTCAGACATTGGTGAACATGGTTTTCAGGGTGTCTGATCAAGAATGCAGTGAGAGTGCTGTTGAAGTGCTTTTAATAGTTTGTGGTGAATTTGGGTGTGCAAGAGAGGAAGCCATTGAGAATGGAGTTTTGACTCAATTGCTATTGCTTTTGCAGAGTCAGTGTAGTAATGCAACAAAATCAAAGGCGAGAATGCTGCTAAAATTGCTAAGATCGGAGGCAAAGCAGGGTTAG 1164 0.4132 MNESQNTIPHLFRCPISLDLLEDPVTLCTGQTYDRSNIEKWFASGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQFDPGNSEIPTIDSLASLKRNLESHETSLENKLQALRKISLLSDEYCSFNKSCFLQLDFLPLLLELVFGTQVSKNDMNLIELGLCCIRKLLPLGSSEPLNVIKDGSKLSSFVLLFEKGTNSVKSSLCRVIESASSTSDTQDLCSILGNSHKLVHEIVHVVNQNYEVSVDAIKAMSALCSMQSNRESLVRGGAIEEIIRYISSSERRDLAPVAMRIVEKLVDLKSAKEALVNQPGGVQTLVNMVFRVSDQECSESAVEVLLIVCGEFGCAREEAIENGVLTQLLLLLQSQCSNATKSKARMLLKLLRSEAKQG 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02265 387 PANTHER OS02G0542800 PROTEIN 7 382 - -
Cca09g02265 387 SUPERFAMILY RING/U-box 4 76 - -
Cca09g02265 387 Gene3D - 91 279 IPR011989 -
Cca09g02265 387 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Cca09g02265 387 CDD RING-Ubox_PUB 12 54 IPR045210 -
Cca09g02265 387 Coils Coil 90 114 - -
Cca09g02265 387 Gene3D - 282 386 IPR011989 -
Cca09g02265 387 SUPERFAMILY ARM repeat 89 378 IPR016024 -
Cca09g02265 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 266 309 IPR000225 GO:0005515
Cca09g02265 387 PANTHER WDSAM1 PROTEIN 7 382 IPR045185 GO:0061630
Cca09g02265 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Cca09g02265 387 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Cca09g02265 387 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02265 Cca-Chr9 47877555 47879771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02265 8 366 U-box Gene Family AT3G19380 30.423 3.14e-42 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02265 - - gmx:100805322 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02265 09 47877555 47879771 Cca09g02265 09 47877555 47879771 ECH