Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02262 ATGCCGGCGTGGTggagtaggaagtggagcaagagcagcgaggagcaggaTGAAGAGGAAGTGCCACGTGGCGGTCTTCAATTGAATTTCATCACCaagacgaagaacaggaagaataagaagaagCCCAAGAGCTTGGACGACAAGCTCAAAGGCCTTCCCTTACCTCGCCCACCCGATCAACCCTTTGGATCTCTTTCCATGTCTGGTTCCAGCGTCAGCTCCTCAACCTCCCTCGACGATCATCCAATTTCGCCTCACTTTAGTGCCAACAGAGGACAAGATGAGGTGAGGTTGAATGTGAGGTCAAAGAGTCCAGGTCCTGGGTCAAGAGGACCTACAAGTCCTACCTCGCCGCTTCATCCAAGGTTGCATGCTTTGAGTCTTGACTCTCCTACGGGTAAGCAGGAGGAGGGAAGGAGTGAGTGTCATCCGTTGCCTCTTCCTCCTGGCTCCCCAACTAGTCCTTCTTCTGTGCTTCCCAACGCACGAGCAAATGGACAGTTGGAAAACGCTACCAGCAATGTATCCAAATGGAGAAAAGGAAAGCTTCTAGGACGGGGAACGTTTGGGCATGTATACCTGGGATTCAATAGTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAAGGTTGTCTCTGATGATCAAACATCAAGAGAGTGCCTCAAACAACTTAACCAGGAGATAAATTTGCTAAATCATCTTTCTCACCCAAATATTGTTCAATACTATGGGAGTGAGCTGGTAGAAGAATCACTATCTGTATATTTGGAATATGTCTCTGGTGGTTCTATCCATAAATTACTTCAGGAGTATGGTCCATTTAAGGAGCCTGTTATTCAAAATTATACCAGGCAAATTGTCTCCGGACTTGCCTATCTGCATGGAAGAAATACAGTACACAGGGATATTAAAGGGGCAAACATACTAGTTGATCCTAATGGTGAAATCAAACTGGCAGACTTTGGAATGGCTAAACATATAAACTCTTCTGCCTCAATGCTTTCATTCAAAGGAAGTCCAAATTGGATGGCTCCGGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCAGTTGATATATGGAGCTTGGGATGCACAATTATTGAAATGGCAACATCAAAACCTCCTTGGAGTCATTATGAAGGGGTAGCTGCCATATTTAAAATTGGGAATAGCAAAGATATGCCCGAAATCCCTGAGCATCTTTCAAATGAGGCGAAGAGTTTCATCAAGCTATGCTTACAAAGGGACCCATTAGCTCGCCCAACAGCCCAAAAGCTACTAGACCATCCCTTCATTCGAGATCAATCAGCAACAAAAGCTGCAAATGTCAGCATAACTGGGGAAGCTTTCACATACATGTTTGATGGAAGCCGGACACCGCCCGTGTTAGAGTCTCATTCCAATCGAACAAGTATAACACTTGATGGAGATTATGCATCAAGGCCAGCTGTTGCAGCTCCACGTGCATTAAGGAGTCCAAGAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCTTCTTCAAGTCCATTGCGACGGTACGGGCCAAATCATCAGAGCTGTTTCTTTTCTCCTCCTCATCCGTCTTACACAATAATGGGACAAAATAGTTACACTTTGAATGACATATCCTCGTATCCTATGAGATCAAGTGCCACATTCACTCTTGATCCTTGGTCTGAAACATCTCGATACAGAGCCAATACACCACCTGGTGGATCTCCAAGAATGAGACTCATTTGA 1755 0.4285 MPAWWSRKWSKSSEEQDEEEVPRGGLQLNFITKTKNRKNKKKPKSLDDKLKGLPLPRPPDQPFGSLSMSGSSVSSSTSLDDHPISPHFSANRGQDEVRLNVRSKSPGPGSRGPTSPTSPLHPRLHALSLDSPTGKQEEGRSECHPLPLPPGSPTSPSSVLPNARANGQLENATSNVSKWRKGKLLGRGTFGHVYLGFNSENGQMCAIKEVKVVSDDQTSRECLKQLNQEINLLNHLSHPNIVQYYGSELVEESLSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPNWMAPEVVMNTNGYSLPVDIWSLGCTIIEMATSKPPWSHYEGVAAIFKIGNSKDMPEIPEHLSNEAKSFIKLCLQRDPLARPTAQKLLDHPFIRDQSATKAANVSITGEAFTYMFDGSRTPPVLESHSNRTSITLDGDYASRPAVAAPRALRSPRDNTRMITSLPVSPSSSPLRRYGPNHQSCFFSPPHPSYTIMGQNSYTLNDISSYPMRSSATFTLDPWSETSRYRANTPPGGSPRMRLI 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02262 584 PANTHER MAP KINASE KINASE KINASE 63 565 - -
Cca09g02262 584 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 63 565 - -
Cca09g02262 584 SUPERFAMILY Protein kinase-like (PK-like) 177 523 IPR011009 -
Cca09g02262 584 MobiDBLite consensus disorder prediction 1 163 - -
Cca09g02262 584 Pfam Protein kinase domain 180 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02262 584 MobiDBLite consensus disorder prediction 64 84 - -
Cca09g02262 584 ProSiteProfiles Protein kinase domain profile. 179 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02262 584 ProSitePatterns Protein kinases ATP-binding region signature. 185 208 IPR017441 GO:0005524
Cca09g02262 584 SMART serkin_6 179 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02262 584 CDD STKc_MEKK1_plant 178 435 - -
Cca09g02262 584 Gene3D Transferase(Phosphotransferase) domain 1 176 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02262 Cca-Chr9 47849418 47855015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02262 90 497 MAP Kinase Kinase Kinase AT1G53570 65.311 5.84e-179 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca09g02262 Pkinase 3.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02262 K04421 - gmx:100787064 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02262 09 47849418 47855015 Cca09g02262 09 47849418 47855015 ECH
Cca09g02262 09 47849418 47855015 Cca03g00167 03 2596145 2604291 PCT