Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02257 ATGGCTAGAAAGAAATTGATACCGGGGTTTCGGTTCCACCCCACTGGCGTTGAGTTGGTTGTGTACTTTCTGAAGAGGAAAGTGATGGGGAAAAAGTTTTGTGATGGTGTAATAGCTGAACTTGACATATACAAGTATGCTCCTTGGGATCTCCCAGACATGTCTTGTCTGAGAACTGGGGAATTGGAATGGTACTTCTTCTGCTCGAGAGAGAAGAAATATTGCAGTGGGAGCAGGATGAAGCGCGCTACTGAAATTGGGTATTGGAAAGCTACTGGGCAGGATAGAGTTGTTCGGCACAATAATCAAACTGTGGGGAAGATAAAAACACTGATATTTCACACTGGTAAATCGCCTCATGGCAAAAGAACTGATTGGGTTATGCACGAGCATAGGCTTGAAGATAAGGACCTCGCTGACAAAGGAATTGCTCAGGATTCCTATGTAGTCTGCAAGGTATTCCAAAAGGAAGGTCGTGGTCCCAGGAATGGTGCACAATATGGGAGACCGTTTAATGAGGAAGACTGGGACGGTGAAGAACTGGGAATACCTTGTGCTGCTTTGTCTGCACCACTTCCCATCTTGCCTATGACATCTGATGGTTCTGTTCCAAATGACAATGATCTCCATGCTGTTGGATGTATTGGGTTAGCTTCCACTTCATGTCTATCAGGATCAATGCCTTCTCCTGGCACAGCAAATCCTTCTGAACCAAATGAGAAAGCTGTTAACAATGATGATGATGATATTTTATCAATGCTTGAGATTTTTAAAGAAGACAATTTTTTTGAGAAGGTTGATAATCCTGGACTGGAAAACATTGCTGAAGGTGCAGCTTTAGATGGATTTTTTGAGGGCTTGGAAGACTACATGGCCGGTTTCTTCTCTGGCCAGATTACTGGATTTGGCACAAACGAAATGGCTACTACAGGTGATGTCGGGAGCTTTGACAACTTGGACTTCCTAGAGTTAATCGACTTAGACCCTCCATTGTTCATGCCGACAACACAACCTTGA 1017 0.4385 MARKKLIPGFRFHPTGVELVVYFLKRKVMGKKFCDGVIAELDIYKYAPWDLPDMSCLRTGELEWYFFCSREKKYCSGSRMKRATEIGYWKATGQDRVVRHNNQTVGKIKTLIFHTGKSPHGKRTDWVMHEHRLEDKDLADKGIAQDSYVVCKVFQKEGRGPRNGAQYGRPFNEEDWDGEELGIPCAALSAPLPILPMTSDGSVPNDNDLHAVGCIGLASTSCLSGSMPSPGTANPSEPNEKAVNNDDDDILSMLEIFKEDNFFEKVDNPGLENIAEGAALDGFFEGLEDYMAGFFSGQITGFGTNEMATTGDVGSFDNLDFLELIDLDPPLFMPTTQP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02257 338 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Cca09g02257 338 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Cca09g02257 338 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Cca09g02257 338 PANTHER PLANT NAC DOMAIN PROTEIN 1 234 - -
Cca09g02257 338 PANTHER PLANT NAC DOMAIN PROTEIN 239 328 - -
Cca09g02257 338 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Cca09g02257 338 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 239 328 - -
Cca09g02257 338 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02257 Cca-Chr9 47802513 47806238 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02257 1 331 NAC Transcription Factor Family AT5G09330 43.094 1.27e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca09g02257 NAM 1.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02257 - - gmx:100778933 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02257 09 47802513 47806238 Cca09g02257 09 47802513 47806238 ECH
Cca09g02257 09 47802513 47806238 Cca03g00164 03 2534472 2553715 PCT