Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02250 ATGAACACCAACAACCAGAGTGCATTCACAAATGTGAACAGCACTTGGAACCTTGAAAAGATGGAAACAAATGAACAACAAGATGATCACCATGATATTATTCTCCAAGTCCACGACCCTATGAATTCTGGGATTTGGCCCAACAACTACCAAAACCAAAACCTTAACCTTGTTCATCAAATGCATCAAACACCAACCACAACCTCTTCCTCAGGGTTCCTCAGTGACATACTAGGCGTACACAACGTagaagaagatgaagagccagaagaagaGCTTGGAGCCATGAAGGAGATGATGTACAAGATCGCTGCTATGCAGCCAGTGGACATCGACCCCGCCACCATCCGAAAACCAAAGAGAAGAAACGTTCGCATCAGCGACGACCCTCAGAGTGTGGCTGCACGCCACAGGAGAGAGAGGATCAGCGAGAAAATCCGCATCCTCCAAAGACTCGTCCCCGGAGGAACCAAAATGGACACAGCTTCAATGCTTGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATCAGGTTGCTCCAATCCATTCCTCAAACCTCACAACCGCAACCACAATGCATTACCACTCATCATGCTAGTAGCACCTTCTTGTTAGCCCCATCTTGTGATTGGTCTTTTGCACCAAATCTGTTACTCAGTTCCACCGCTGTCGCCACCGCCGCCATCGACATGCCGCCCGGACTCGGATTCCATGGCCATGCTCATGCTTGTGATGCCTCCTCCAGCTTCAATCATCATGAGGGAAAAGTCATGGTGAGACAGATTGACCTAAAGCTGAAAATCCCTTTATTTGCTATTTTGTGTGTAGGTGTGAGGGAGGAGGGAATGATACCTTTGTTGTAA 870 0.4609 MNTNNQSAFTNVNSTWNLEKMETNEQQDDHHDIILQVHDPMNSGIWPNNYQNQNLNLVHQMHQTPTTTSSSGFLSDILGVHNVEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPQTSQPQPQCITTHHASSTFLLAPSCDWSFAPNLLLSSTAVATAAIDMPPGLGFHGHAHACDASSSFNHHEGKVMVRQIDLKLKIPLFAILCVGVREEGMIPLL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02250 289 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 12 230 IPR045843 GO:0003700|GO:0006355
Cca09g02250 289 CDD bHLH_AtIND_like 127 184 - -
Cca09g02250 289 Gene3D - 129 194 IPR036638 GO:0046983
Cca09g02250 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 194 IPR036638 GO:0046983
Cca09g02250 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Cca09g02250 289 Pfam Helix-loop-helix DNA-binding domain 136 175 IPR011598 GO:0046983
Cca09g02250 289 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 12 230 - -
Cca09g02250 289 SMART finulus 132 181 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02250 Cca-Chr9 47733183 47734880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02250 95 202 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 71.818 3.43e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca09g02250 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02250 - - gmx:100775296 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02250 09 47733183 47734880 Cca09g02250 09 47733183 47734880 ECH
Cca09g02250 09 47733183 47734880 Cca03g00157 03 2371472 2373402 PCT