Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02249 ATGAGCGGAAGTGGCAGAAAGACCTCTTCAAAGTGGGATTCGAGAGATGAACCTGAATTTGCATCTTATAGTGTTGCTAGTAGAGATAGTTCAAAGTGGTCCAATTTAGAAAGAAATGATAAGTTAAACCCCAGAATGGGGTTTTCAGGCAAGGAACCTTTTTCTGGTGGCAGAGGTCCAAGTAAGGATGATATTACAAATAAAGATTACAGAGTTTTGGATCCAACAAATGCTCGGGACACTGATGGAAGTTACAGCATGGAAATGTCTCCAGGGCCCGAGGATTGTAAAAATAAGTACAGTCAATCTCCAAAAAATGGTTGGAGTAGGAGTAATCAAAGCAGAAGTAGGAGTCGGAGCCCTCCACGTAGTTTTAGGAGGGATTTAGGAGTCAATGACAGATATAGAATGAGGACACAACCATGTAGAGATTTTGCTGCTGGGAAATGCAGAAGAGGCAGCCAATGCCATTTCCTTCATCATGATAATCAAAATTATGATGGCTGGGAAAGTAGACACAGGCATGATGGAACTCCCAGATATTCTGCTCCCCATGAGAGTGGGGACTATTCTCGTACAAGTGGAAGATCTAATGACACTTGTATCAATTATGCAAAAGGAAGGTGCAGAATGGGAGCATCATGCAAGTACGTGCATCATGACAATTCTGATCAATTCAGTTCTGTGGATGAATCAACTAGGGAAAGGGAAATTGATAGAAGGCGCCCCGAGAGTTCTTTCGAGCATGTTGGTCGATACAGTACAAACCAGAATGGTGATATTCCTTGCAAATTTTTTGCATTTGGGAATTGTCGAAATGGTAAACATTGTAGGTTTTCTCATGATTGGCAAGCATGTGGGAGCCCAAATAGAAGATTTGGGGATGATAGGTTGAGGAGCAGTCAAGGTGGAGATCAGGCTTTGGATAGGCCAAAATTGAGTGATGAAGTTAGTCCCAACGGAAGGCTAAGAGATGATAGATGGGGTTTAGACGGTAGTACGGCTGATGAAAATAAAGTTTGGGGTGGTTCCAAGCAGAATGATTTAGTTGTTGTCTCTAATATAGCAAAGCTGGTGGAGGATAACAGAAATTTTATGGGCACCCCAGAACCTGGATTCCCTGCTTGGCCAATTAGTGATGGATGGGACCATAGCTTAGATAAGAACAGAGTGCATGATGAATCACCATTTTCAAGTGATATGAAGGAAGCCAATTGGACAGCAAAAAATGATAGTTCGAATGTTCACACTTCCCAGTCAGTAGGCTCGGACATTTGGCCTGGTAATGAAAAAATGTCTCCTGATTGGAATTATGGTGTGGGATCTTCCACCCATATCAAAGAGGAGCATGGGCAGAGTAAGCAACAGGTTCTTCCAGGACAAGTATTTCATCAGAATGTAAATGCTTTGCATTCTTCAAGCTGTCTCGCCATTGGACAGAGTCAAGGAGCAGCTTCCATTGTTCCTCCCATAGTGAGAACTGTTGACGATATTCCAAACCAGGAAGTCTCTGCTGAGAAAAAATACATTGTTGAGCCTACTATCCAGGATGTAAATGTATCACAAGTTAGTTCAAGAAATCCTCTAACTCAGAACATGGTAAGCAAAGAGCAGCTAGCTCAACTTACTAACCTGTCAGCTTCTCTGGCACATATCCTCGGAGCAGGTCAGCAGCTCCCGCAACTTTATGCTACCTCTATTTCTCTAGACTCAAAGGATACTCCCTTTCTAAGCAAAACTGAAGGGTCTGATAATCCTGTTTCCATAACATTCATCAAGCCAGATCCTGCTGTTGGATTCCAGAAGCAGTATGATCCAAAATGTAATAGTAGGGAGCCAAATAATGCTAATTCAAATGGGGTTCCCTCTACCTCTTCTCCAAGTAAAAATATCCCAAAAGATACAGCAGAAATTCCGTCACTGTTATCCAAGTTAGGACAACATTTTGATGAATCTAACTCAAAGCCTGCCTTTTCGGAAGAACAATTTGTTAAGAGTGAACATTCAGTTCAGTTGCAGAAAGGTGAAAATGTTGAGGTTAATAAGGAGAACAAAGTGGTAGCCGAAGAAAAGCAAAGTTCTTCATGTGAAAATAAAATTACAGAAGAGAATGGTCCTATGAAAAACTTGGACCAAAACAGTGGGCCTGATGAGGCCAAGAAAACAAAGGATGTGAAGGGGATTCGTGCATTTAAATTTTCATTGGTTGAGTTCGTTAAGGAGCTTTTGAAACCAACATGGAAAGATGGTAAAATCGCTAAGGAAGATTATAAAGCAATTGTGAAGAAAGTTACTGACAAAGTAACTGGTACAGTGCAGCGGGGACATATTCCTCAGACACAAGAGAAAATTGACCGCTATTTATCATTATCAAAACCAAAGGTTAACAAACTTATACAGGCATATGTGGAAAAGGTTCAGAAGGCTTAG 2430 0.4128 MSGSGRKTSSKWDSRDEPEFASYSVASRDSSKWSNLERNDKLNPRMGFSGKEPFSGGRGPSKDDITNKDYRVLDPTNARDTDGSYSMEMSPGPEDCKNKYSQSPKNGWSRSNQSRSRSRSPPRSFRRDLGVNDRYRMRTQPCRDFAAGKCRRGSQCHFLHHDNQNYDGWESRHRHDGTPRYSAPHESGDYSRTSGRSNDTCINYAKGRCRMGASCKYVHHDNSDQFSSVDESTREREIDRRRPESSFEHVGRYSTNQNGDIPCKFFAFGNCRNGKHCRFSHDWQACGSPNRRFGDDRLRSSQGGDQALDRPKLSDEVSPNGRLRDDRWGLDGSTADENKVWGGSKQNDLVVVSNIAKLVEDNRNFMGTPEPGFPAWPISDGWDHSLDKNRVHDESPFSSDMKEANWTAKNDSSNVHTSQSVGSDIWPGNEKMSPDWNYGVGSSTHIKEEHGQSKQQVLPGQVFHQNVNALHSSSCLAIGQSQGAASIVPPIVRTVDDIPNQEVSAEKKYIVEPTIQDVNVSQVSSRNPLTQNMVSKEQLAQLTNLSASLAHILGAGQQLPQLYATSISLDSKDTPFLSKTEGSDNPVSITFIKPDPAVGFQKQYDPKCNSREPNNANSNGVPSTSSPSKNIPKDTAEIPSLLSKLGQHFDESNSKPAFSEEQFVKSEHSVQLQKGENVEVNKENKVVAEEKQSSSCENKITEENGPMKNLDQNSGPDEAKKTKDVKGIRAFKFSLVEFVKELLKPTWKDGKIAKEDYKAIVKKVTDKVTGTVQRGHIPQTQEKIDRYLSLSKPKVNKLIQAYVEKVQKA 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02249 809 MobiDBLite consensus disorder prediction 1 131 - -
Cca09g02249 809 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 807 - -
Cca09g02249 809 MobiDBLite consensus disorder prediction 168 182 - -
Cca09g02249 809 MobiDBLite consensus disorder prediction 409 430 - -
Cca09g02249 809 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 807 - -
Cca09g02249 809 Gene3D - 131 236 - -
Cca09g02249 809 SUPERFAMILY CCCH zinc finger 134 163 IPR036855 GO:0046872
Cca09g02249 809 MobiDBLite consensus disorder prediction 678 697 - -
Cca09g02249 809 MobiDBLite consensus disorder prediction 292 333 - -
Cca09g02249 809 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Cca09g02249 809 MobiDBLite consensus disorder prediction 649 677 - -
Cca09g02249 809 MobiDBLite consensus disorder prediction 226 246 - -
Cca09g02249 809 MobiDBLite consensus disorder prediction 96 119 - -
Cca09g02249 809 Pfam CCCH-type zinc finger 262 282 IPR041367 -
Cca09g02249 809 MobiDBLite consensus disorder prediction 649 721 - -
Cca09g02249 809 MobiDBLite consensus disorder prediction 409 426 - -
Cca09g02249 809 MobiDBLite consensus disorder prediction 607 633 - -
Cca09g02249 809 MobiDBLite consensus disorder prediction 168 194 - -
Cca09g02249 809 MobiDBLite consensus disorder prediction 598 634 - -
Cca09g02249 809 Gene3D - 237 293 - -
Cca09g02249 809 ProSiteProfiles Zinc finger C3H1-type profile. 257 284 IPR000571 GO:0046872
Cca09g02249 809 SMART c3hfinal6 196 221 IPR000571 GO:0046872
Cca09g02249 809 SMART c3hfinal6 257 283 IPR000571 GO:0046872
Cca09g02249 809 SMART c3hfinal6 136 162 IPR000571 GO:0046872
Cca09g02249 809 Pfam RNA-binding, Nab2-type zinc finger 201 219 - -
Cca09g02249 809 ProSiteProfiles Zinc finger C3H1-type profile. 195 222 IPR000571 GO:0046872
Cca09g02249 809 SUPERFAMILY CCCH zinc finger 260 282 IPR036855 GO:0046872
Cca09g02249 809 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Cca09g02249 809 MobiDBLite consensus disorder prediction 291 341 - -
Cca09g02249 809 MobiDBLite consensus disorder prediction 62 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02249 Cca-Chr9 47700023 47709172 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca09g02249 zf-CCCH 5.3e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02249 - K22909 gmx:100783856 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02249 09 47700023 47709172 Cca09g02249 09 47700023 47709172 ECH