Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02248 ATGCCTtccctcttctacctctctctctctctctctctagctctcgctctcgctctcattttatccctctcCACCGCCCAGGAGCCCATCCATGAAGCCTGCGCAGCCACGCGCTTCCCAGACGATTGCGTCTCCAACCTCATGCATTCCACCCTCCCGCCCACCGCCACCTCTCTGCAGCTCCTCCACTCCGCCATCTCCATCTCCGCCGACAAACTCGCCGCGGTCCAGAACTTGGCCAAGGGCATCTACCAATCCGCCGGGGACAGCCGCAACCGCAGCGTCGCCGCCGCCACCTGCATCGAAATCCTCGCCAACTCGCAGCACCGCATCGCCCTCGCCTCCGACGCCCTGCCACGTGGCGGAACCAAGGACGCGAAAGCCTGGCTGAGCGCCGCCCTCGCCTACCAGTACGACTGCTGGAACAGCTTCAAGTACGCCAACGACACCCGCGAGGTCGCCGCGGCGATGACGGCCATCACCAATCTCATGGTTGCCTCCAGCAACGCCCTCAGCATGGCGTCCGCGCTCTACGCCTACGGAAGCGACTCGGCGGCGTGGAAGCCACCCGCCACCGAGCGCGACGGCTTCTGGGAGCCCGTCGGGGCGAGCGGCGGTACCGGAGTCCCCGGGGTTCCGTCGAATTTGAAGGCGGACGTTACGGTGTGTAAAGAGGGAGGGAGCGGGTGTTATAAGACGGTGCAGGAGGCGGTTAACGCGGCTCCGGATAACGGCGTTAAGAGGTTTGTGATATATATAAAGGAAGGGGTTTATGAAGAAAGCGTTAGGGTTCCGCTGGCGAAGAGGAATGTGGTTTTCTTGGGCGATGGCATGGGCAAAACGGTCATCACCGGCTCTGCTAACGTTGGCCAACAGTTTATGACAACTTACAACTCTGCGACCGTGGCGGTTCTTGGCGATGGATTCATGGCTAAGGATCTGACAATCGAAAACACTGCGGGTCCCGACGCCCACCAAGCAGTGGCATTCAGATTAGACAGTGACCTCTCCGTGATTGAGAATTGCGAATTCTTGGGCAACCAAGACACTCTCTATGCTCACTCTCTGCGCCAATTTTACAAGTCATGCCGCATCCTGGGCAACGTCGACTTCATATTCGGCAACGCCGCTGCAATTTTCCAAGACTGCCAGGTCCTAGTTCGCCCCAGGCAACTCAGGCCAGAGAAGGGAGAAAACAATGCCATCACTGCACATGGCAGAACAGACCCTTCGCAAGCCACCGGCTTTGTTTTCCAGAACTGTTTGATCAATGGCACCGAGGAATACATGGCTCTCTATCGCCGCAACCCCAAAGTGCACAAGAACTATCTGGGTAGGCCCTGGAAGGAGTTCTCCAGAACAGTTTTCATCAATTCATTCTTGGAGGCCCTTGTGACGCCCCAGGGTTGGATGCCATGGAGTGGTGACTTTGCTCTCAAGACCCTTTACTATGGGGAGTTTCAGAACACGGGACCTGCTGCTGATTTGTCTCATAGGGTGCCATGGAGTAGCAAGATACCTGCTGAAAACGTGTTAACGTATTCAGTGCAGAATTTCATTCAAGGAAATCAGGTGTCATCATCTGCTGCTGGCCCATCGTCGTAA 1605 0.5489 MPSLFYLSLSLSLALALALILSLSTAQEPIHEACAATRFPDDCVSNLMHSTLPPTATSLQLLHSAISISADKLAAVQNLAKGIYQSAGDSRNRSVAAATCIEILANSQHRIALASDALPRGGTKDAKAWLSAALAYQYDCWNSFKYANDTREVAAAMTAITNLMVASSNALSMASALYAYGSDSAAWKPPATERDGFWEPVGASGGTGVPGVPSNLKADVTVCKEGGSGCYKTVQEAVNAAPDNGVKRFVIYIKEGVYEESVRVPLAKRNVVFLGDGMGKTVITGSANVGQQFMTTYNSATVAVLGDGFMAKDLTIENTAGPDAHQAVAFRLDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRILGNVDFIFGNAAAIFQDCQVLVRPRQLRPEKGENNAITAHGRTDPSQATGFVFQNCLINGTEEYMALYRRNPKVHKNYLGRPWKEFSRTVFINSFLEALVTPQGWMPWSGDFALKTLYYGEFQNTGPAADLSHRVPWSSKIPAENVLTYSVQNFIQGNQVSSSAAGPSS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02248 534 CDD PMEI-like_3 33 177 - -
Cca09g02248 534 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 173 IPR006501 GO:0004857
Cca09g02248 534 Gene3D - 213 531 IPR012334 -
Cca09g02248 534 PANTHER PECTINESTERASE 20 524 - -
Cca09g02248 534 Pfam Pectinesterase 219 523 IPR000070 GO:0030599|GO:0042545
Cca09g02248 534 SMART PMEI_2 25 173 IPR006501 GO:0004857
Cca09g02248 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 177 IPR035513 -
Cca09g02248 534 Pfam Plant invertase/pectin methylesterase inhibitor 30 173 IPR006501 GO:0004857
Cca09g02248 534 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 20 524 - -
Cca09g02248 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 178 IPR035513 -
Cca09g02248 534 SUPERFAMILY Pectin lyase-like 217 527 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02248 Cca-Chr9 47692399 47694537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02248 30 530 Carbohydrate Esterase AT5G09760 63.189 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02248 - - gmx:100819675 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02248 09 47692399 47694537 Cca09g02248 09 47692399 47694537 ECH
Cca09g02248 09 47692399 47694537 Cca03g00155 03 2272848 2275759 PCT