Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02243 ATGCTGGGCTCTGATGATGGTGATGTTGATGTGTTCTTCGACTCTGTGGATAGTTTCTCAGCTCAAGATTGTCTTTTAGCGACAGAATTTGGTTGTGATTATGAAGAAATTTGGGTGAAAGAGCCTGTTAGTGTGAAGGAGAGGAGGGAACGTTTTCTGCAGGGTATGGGTTTGACTCATGCTTCTTCCAAGGTTTGTTCACAAGAGAAAATGTGCTTTGATGACTCATCCACCAGCCTGGGATTGGAGAGGATCAGGGAGTGCAGTGGGGCAATCTCAAATGCTTGCTCTACACAAACTGATCAAGTATCCGAGGAGTTAGTTCTCTCTGGAGGGAAAGCAGCTACTGTAGCAAAAGTCTTTTTGGACGAAGCAAAAGGGTGTCTCCAAGATGAAGCAGATGCAAAGTTACAATGGAAAGTGCATGAGGTCTCTTCTATAGCTCAGCAGCACAGACACACAGAAGCTGATTCACAAGAAGTATTTCAGGATTTTGATATCGGTAAAAGGAAGAGGAAAAAATGGTGGAAGCGCTTTGTTAACGTGAGGAAAGGTGGAGAAGGAAATGTTAGATCAAAATTGAATGCAGGGACAAATAAAACTCGAAGAATAAAGGTAACACGGAATAAAAAGAGGTGGCTGGAGTTCAGTGGGCTATACATTGGACAAGAGATTAGAGCACACAAAGGCCTAATCTGGACCATGAAATTTAGTCCCAATGGTAAGTATTTAGCGAGTGGAGGTGAAGATGGTGTTGTGCGCATTTGGCGTGTTATATCAATGAATAAATCCAATATTTGTTTCACCCCAGAAGATAGTACTTCTAATATCAAAGTGGAATGTGACAGCTCTTCTCCTTGGGAGAAACACCCAAGCCAACCCTTCGTTTTCCTTCCAAATAGTATTTTTCAGATTGAGGAATCACCCCTGCAAGAACTCTTTGGTCATTCCAGTGATGTCTTGGATTTGGCTTGGTCCAATTCAGATATTCTCCTTTCATCTTCTATGGATAAGACTGTTCGCTTGTGGCAAGTTGGCTGTAATCAATGTCTAAATGTTTTCCGGCACAATGACTATGTGACATGCATTCAGTTCAACCCTGTTGATGAAAATTACTTCATTAGTGGGTCCATTGATGGCAAGGTTCGAATATGGGGATTACGTGAACAGCGAGTTATTGACTGGGCAGATATAATAGATGTCGTAAGTGCTATAAGTTACCAGCAAAATGGGAAGGGGTTTATAGTTGGTTCTGTTACGGGCACTTGTCGTTTTTATGTGGCTTCAGGAAAATATTTCCAGCTTGAGGCGCAGATAGATATCCATGGAAAGAAGAAATCATCAGGCAACAAGATTACTAGCATTCAGTTCTCCCAAAAAAACTGTAAGAGAATTATGATCACATTAGAAGATTCCCAAATTCGTATATTTGATGGCATTGAGCTGGTTCAGAAATACAAAGGTCTTCCTAAGTCAGGAAGTCAGATGTCTGGTTCATTTACATCAAGTGGAAAACATATGATTTCGGTTGGAGAGGACTCCCATGTATATATTTGGAACTTCGATGACTTGGGGAATGCTTCTTCAAAACAGACGAAATCCAAAAACTCCTGTGAGTACTTTTTCTCCAAGGGTGTTACTGTTGCAATACCTTGGCCAGGTATGAAATCAGATCAAGGGGGTTCTAGTGGTAATTTTTCCCACCATTCTTCAGAAAGGCAAACTCAACTAGAGGTTGCTCCTGAGGCAAGAGATTCTGAACGCTTTTCTCTTGGTAATTGGTTCGCCATTGATGGCACATGTTGGGGTTCTATGACATGGCCTGAGGAGAAACTTCCAATCTGGAATTTACCTATAGCAGCAGATGAATATGATCAAAAGCAGTTATGTCACAAAGATCATTGCCATGACAGAAGTGTATCAGAAACATGGGGACTATCGATTGTGGCAGCTAGTTGTGATGGAACTATCAAGACATTCCACAACTTTGGATTGCCCGTTAGAATTTAG 2010 0.4144 MLGSDDGDVDVFFDSVDSFSAQDCLLATEFGCDYEEIWVKEPVSVKERRERFLQGMGLTHASSKVCSQEKMCFDDSSTSLGLERIRECSGAISNACSTQTDQVSEELVLSGGKAATVAKVFLDEAKGCLQDEADAKLQWKVHEVSSIAQQHRHTEADSQEVFQDFDIGKRKRKKWWKRFVNVRKGGEGNVRSKLNAGTNKTRRIKVTRNKKRWLEFSGLYIGQEIRAHKGLIWTMKFSPNGKYLASGGEDGVVRIWRVISMNKSNICFTPEDSTSNIKVECDSSSPWEKHPSQPFVFLPNSIFQIEESPLQELFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQVGCNQCLNVFRHNDYVTCIQFNPVDENYFISGSIDGKVRIWGLREQRVIDWADIIDVVSAISYQQNGKGFIVGSVTGTCRFYVASGKYFQLEAQIDIHGKKKSSGNKITSIQFSQKNCKRIMITLEDSQIRIFDGIELVQKYKGLPKSGSQMSGSFTSSGKHMISVGEDSHVYIWNFDDLGNASSKQTKSKNSCEYFFSKGVTVAIPWPGMKSDQGGSSGNFSHHSSERQTQLEVAPEARDSERFSLGNWFAIDGTCWGSMTWPEEKLPIWNLPIAADEYDQKQLCHKDHCHDRSVSETWGLSIVAASCDGTIKTFHNFGLPVRI 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02243 669 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Cca09g02243 669 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Cca09g02243 669 PRINTS G protein beta WD-40 repeat signature 373 387 IPR020472 -
Cca09g02243 669 MobiDBLite consensus disorder prediction 559 577 - -
Cca09g02243 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Cca09g02243 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 345 - -
Cca09g02243 669 MobiDBLite consensus disorder prediction 559 579 - -
Cca09g02243 669 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 669 - -
Cca09g02243 669 Gene3D - 217 546 IPR015943 GO:0005515
Cca09g02243 669 PANTHER WD REPEAT DOMAIN 44 1 669 IPR040324 -
Cca09g02243 669 Pfam WD domain, G-beta repeat 349 385 IPR001680 GO:0005515
Cca09g02243 669 Pfam WD domain, G-beta repeat 308 343 IPR001680 GO:0005515
Cca09g02243 669 Pfam WD domain, G-beta repeat 224 256 IPR001680 GO:0005515
Cca09g02243 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 353 IPR001680 GO:0005515
Cca09g02243 669 SUPERFAMILY WD40 repeat-like 220 659 IPR036322 GO:0005515
Cca09g02243 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 388 - -
Cca09g02243 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 395 IPR001680 GO:0005515
Cca09g02243 669 SMART WD40_4 388 427 IPR001680 GO:0005515
Cca09g02243 669 SMART WD40_4 432 478 IPR001680 GO:0005515
Cca09g02243 669 SMART WD40_4 306 344 IPR001680 GO:0005515
Cca09g02243 669 SMART WD40_4 479 520 IPR001680 GO:0005515
Cca09g02243 669 SMART WD40_4 347 386 IPR001680 GO:0005515
Cca09g02243 669 SMART WD40_4 218 257 IPR001680 GO:0005515
Cca09g02243 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02243 Cca-Chr9 47650297 47655007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02243 310 517 U-box Gene Family AT2G33340 26.941 3.33e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02243 K20241 - gmx:100819135 1086.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02243 09 47650297 47655007 Cca09g02243 09 47650297 47655007 ECH
Cca09g02243 09 47650297 47655007 Cca03g00946 03 23446293 23449389 PCT