Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02241 ATGGTGAGAGACGATCTATACATCAGCGTCCCCAGCTTCTTCCGCTGCCCCATATCCCTCGATGTCATGAAATCCCCAGTCAGCCTCTGCACCGGCGTCACCTACGACCGCTCCAGCATCCAGCGCTGGCTCGACAACGGAAACAACACGTGTCCCGCCACCATGCAGATCCTCCAAACCAAAGACTTCGTTCCCAACCGAACCCTACAGAGCCTCATCCAGATCTGGTCCGACTCGCTTCCTcacccactccactcgcccgactcactcctctccaAGGACCAAGTCCTCCTCGCCATCTCCCACTTGCAAACTCCTCCTCGCCTCGACTCGCTCGCCAAAATCGCGCGTTTCGCGCTAGATTCCGAGGAGAATCGCGATTTTCTCGCCAGAACGGAATGCTTCGTGCCGCTCTTGGTTGGCCTCCTCGATAATGTCAATGGCGGCGTCGAATTCCTCGAACAGGTGGTGACGGCGTTGGATTTGGTTGTCGGAAAAATGGAAGACGGTGAGAGGCTGAAAAACCTGATGCTCAAGAGGCAGGGCGAGGGACAAAAACAGAGCGTGCTAGATTCTCTGCTTCTCGTTCTGCAACAAGGCAGCCAGGGCGCCAAGGCCGCGTCCGCTAGGGTTTTGAAATCCGTGGCCGTGGACGCCGAATCGAAGCTGTTGATAGCGGAGAAGGAAGGTTTAGTATCGGAGTTGCTGAATCTAATAGCGCCGGAGAAAGATCCGGGTCTAATGGAGAGCTGTTTGTCGTGCTTGGTGGCGATTTCGACGCCGAAACGGAGCAAGATGAAGCTGGTGCGAGTGGGAGCGGTGAAGGTGTTGTCGAGGCTTCTTTGGGCTCCGAGCTTGAGCGTTTGGGCGACGGAGATGGTTCTGAAGGCGGTGGAAACGGTGTCGTCTACGAAGGAAGGGAGGGCGGAGATATGCGAGGAGGCGGCGTGCGTGGCGGCGATAGTGAAGAAGGTTCTGAAGGTGTCGAGCGTGGCGACGGAACACGCGGTGACGACGCTGTGGAGTGTGTGTTATCTGTTTCGGGATGAGAAGGCGCAAGAGGCGGTTACGAAGGCTAATGGATTGACCAAGATTCTGCTTCTAATGCAGAGTAATTGCTCGCCCCATGTGCGCCAAATGTCTGCCGATTTGCTCAAGATATTTCGGGCATGA 1173 0.5431 MVRDDLYISVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQILQTKDFVPNRTLQSLIQIWSDSLPHPLHSPDSLLSKDQVLLAISHLQTPPRLDSLAKIARFALDSEENRDFLARTECFVPLLVGLLDNVNGGVEFLEQVVTALDLVVGKMEDGERLKNLMLKRQGEGQKQSVLDSLLLVLQQGSQGAKAASARVLKSVAVDAESKLLIAEKEGLVSELLNLIAPEKDPGLMESCLSCLVAISTPKRSKMKLVRVGAVKVLSRLLWAPSLSVWATEMVLKAVETVSSTKEGRAEICEEAACVAAIVKKVLKVSSVATEHAVTTLWSVCYLFRDEKAQEAVTKANGLTKILLLMQSNCSPHVRQMSADLLKIFRA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02241 390 Gene3D - 179 288 IPR011989 -
Cca09g02241 390 Gene3D - 289 388 IPR011989 -
Cca09g02241 390 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 388 - -
Cca09g02241 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 84 IPR013083 -
Cca09g02241 390 SUPERFAMILY RING/U-box 5 79 - -
Cca09g02241 390 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Cca09g02241 390 CDD RING-Ubox_PUB 14 56 IPR045210 -
Cca09g02241 390 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Cca09g02241 390 SUPERFAMILY ARM repeat 108 388 IPR016024 -
Cca09g02241 390 PANTHER WDSAM1 PROTEIN 4 388 IPR045185 GO:0061630
Cca09g02241 390 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02241 Cca-Chr9 47626291 47628434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02241 1 389 U-box Gene Family AT5G64660 50.856 1.21e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02241 - - gmx:100799627 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02241 09 47626291 47628434 Cca09g02241 09 47626291 47628434 ECH
Cca09g02241 09 47626291 47628434 Cca03g00150 03 2159458 2161344 PCT