Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02238 ATGGGTTTAAACTATCTTCACGGTCACAACCCGCCGATTATACACAGGGACCTGAAATGTGATAATATATTTATCAATGGTCATCAAGGAGAAGTTAAAATTGGAGATCTGGGGCTGGCAACTTTCTTGGAGCGAAGTAATGCCAAGAGTGTAATTGGAACCCCGGAGTTTATGGCACCTGAGCTCTATGATGAAAATTACAATGAATTAGCTGACATATATTCATTTGGTATGTGCATGCTTGAGTTGGTGACTTCCGAGTATCCTTACAGTGAATGCAGAAACTCAGCCCAGATTTACAAGAAAGTTTCATCTAGTATAAAACCTGTTGCTCTTTCTAAAGTGGTAGATCCAGAAATTAAATCATTCATTGAGAAATGTCTTGTCCCAGCCCCTCAAAGATTGTCAGCCAAGGAGCTTCTGATAGACCCCTTTCTTCAAATGAATGGTTCACCAAAGGATGGTCGTTTTCCATTGCCGGATATTGTTCTTCCCAAATTGGGAGCCTTTGAAAGCCGTTGTATGGTGTCAGAAGGTCCTGCTAGTGCACGCAGTGGAGACATTTCTATGGATCTTGGTGACACCAATGAGCTTCCTGTGATCACTGTATTTGACAAATATACTGATGATGCATCATCATGTTTTACATGTGTTGAGATAAAGAGACAGAAGAGAGGTGATATATTCTTTCTAAAAGGTGAAGAAAATGATGAGAATTCTGTATCATTAGTTCTGCGGATAGCTGATCACAGTGGACGGGCACGAAATATCCATTTCATATTTTACCTTGACAGTGATACTGCTGTGTCGGTTTCAAGTGAAATGGTTGAGCAACTTGAACTTACTGATCATAATGTTAAATTCATAGCTGAGTTAATTGATTTGTTATTGATGAATTTGGTTTCTGATTGGAAACCTTGTGTAGCAATTGATCATTTGATTTCTCCAAATAATAAACGGACTCATCTGAGCCAACAGAGAAAGTTGGGGCTTGCAAATTGCAAGGGAAGCTCAAAACATTCAATTGAAATTGTGGCTGAAGATTTAAGTTGCTTGACCCCGGCCGCAAGATTAGCAGCAAAAGAAAACCTTGATAATATGGATATTGATGAAGCTTTAGCTCATGAATGCAGTGATGTTAAAATAGCTACCAAGGCAGATGATGTGTGCTCTGAGATGTCATATGCTTCTGCAACTACTGACTTCAATGATAATAAGATGTCTATGGTTTCATTCATGTCGGCTGAATCAGCATTTGATAGAGGGAGTCAATCCTCACTTGCATCTGAAAATGGGTCATCGCCTGATTGTAAGAGCAAGTTTTCAGACATAGAAAACTTTCCTAGTCATTCTGACATTGATTCCTCCTTGTGTGATCATGAGAGTGAGTTGAAAATAGAGTTAGAAATGATTGAACAGAAATATCAAGAGGCAATTAATGATTTATTCAAGAGAAGATACCAGGCCATCTTGGAGATTAGAAGGAGAATGTTAGAAAAGATGGTATCATAG 1512 0.3876 MGLNYLHGHNPPIIHRDLKCDNIFINGHQGEVKIGDLGLATFLERSNAKSVIGTPEFMAPELYDENYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSSIKPVALSKVVDPEIKSFIEKCLVPAPQRLSAKELLIDPFLQMNGSPKDGRFPLPDIVLPKLGAFESRCMVSEGPASARSGDISMDLGDTNELPVITVFDKYTDDASSCFTCVEIKRQKRGDIFFLKGEENDENSVSLVLRIADHSGRARNIHFIFYLDSDTAVSVSSEMVEQLELTDHNVKFIAELIDLLLMNLVSDWKPCVAIDHLISPNNKRTHLSQQRKLGLANCKGSSKHSIEIVAEDLSCLTPAARLAAKENLDNMDIDEALAHECSDVKIATKADDVCSEMSYASATTDFNDNKMSMVSFMSAESAFDRGSQSSLASENGSSPDCKSKFSDIENFPSHSDIDSSLCDHESELKIELEMIEQKYQEAINDLFKRRYQAILEIRRRMLEKMVS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02238 503 Pfam Protein kinase domain 2 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02238 503 Gene3D Transferase(Phosphotransferase) domain 1 1 151 - -
Cca09g02238 503 SMART serkin_6 1 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02238 503 Gene3D - 239 332 - -
Cca09g02238 503 ProSiteProfiles Protein kinase domain profile. 1 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02238 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 13 25 IPR008271 GO:0004672|GO:0006468
Cca09g02238 503 SUPERFAMILY Protein kinase-like (PK-like) 2 182 IPR011009 -
Cca09g02238 503 Coils Coil 461 481 - -
Cca09g02238 503 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 502 - -
Cca09g02238 503 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 1 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02238 Cca-Chr9 47575987 47579480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02238 2 342 MAP Kinase Kinase Kinase AT1G49160 64.223 4.60e-161 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Cca09g02238 Pkinase 3.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02238 K08867 - gmx:121175054 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02238 09 47575987 47579480 Cca09g02238 09 47575987 47579480 ECH
Cca09g02238 09 47575987 47579480 Cca03g00149 03 2121583 2124991 PCT