Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02236 ATGAATGCGATGGATTATGAGCATTTTGATTACTCATTTGGCCCTCCTCATATGAATCATCTCCATGATTATGATTATATCTCAGAAAATGCATTTTCATTTCAAACAGAAGATTTCTTATCATCAAACACTATCTTGGATGAAATGTTTGATCTAGAGTCCATGGAAGGATTGCTCACAACCAAACAAGACTATGGTTTCATGAATGATTATGCTACTACAGTGGATCTAGAAACTGAAATGTGTCATGGATTCACCCTTAATATTGAGGAAAATGTGCAAGTTCCAATGGAACAAGGGGATTCTTCTTTAAAGGGAATTCAAGCAGAGCTAATGGAAGAGACTAGTTTGGTTGATCTCTTGCTAACAGGAGCTGAAGCTGTTGAGGCACAAAATTGGACACTTGCTTTAGACATAATTGAGAAACTCAACAATGCCTCATCTTTGGAAAATGGTGATGGTTTATTGAACAGGTTGGCTTCTTTCTTTACTCAGGGTTTGTATTATAAAAGTAAAAATGTGTATGAATTTCCGCAACATGGTTCTTTTTCTACACACACAAATGCTTTATGTGTGTTTCAGATTCTTCAAGAACTTTCTCCCTATGTGAAATTTTCTCATTTCACTGCAAACCAAGCAATCTTGGAAGCCACAGAAGGTGTTGACCATGTTCACATCATTGATTTTGACATCATGGAGGGGATTCAATGGCCACCCTTGATGGTTGACCTTGCAATGAGGAAGATTGCTACTTCCCTTAGAGTAACAGCCATCACGGTGGACCAAAGAAGTGTTGCTTCTATTCAACAAACAGGAAGAAGGCTTAAAGAGTTTGCAGCTTCTATCAACTTTGAATTCATGTTTGATCAGATAGTGATGGCAAGGGAAGAAGATTTTCAAGGAGTTGAACTTGGTGAAACAGTTATAGTCAATTGTATGATACACCAGTGGATGCCTAATAGGAGCTTCTCATTGGTCAAAATTTTCTTAGATGGTGTTAGCAAATTGTCCCCAAGGCTTGTTGTTTTAGTGGAAGAAGAATTATTTAATTTTTCTAGGCTTAAATCCATGTCATTTGTGGAGTTCTTCTGTGAGGCTTTGCATCACTACACTGCACTTTGTGATTCACTTGCTAGTGGTTTAAGGGGTAGGCATAAGATGGAGTTGAGGCTAATAGAAAATGAGGTTTTGGGGTTAAGAATCTTGGATAGCGTGAGGCAATTTCCTTGTGAGAGAAAGGAGAGAAAGGTGTGGGAGGAAGTGCTTTATTCCATGAAAGGGTTTAAATGTGTTCCTATGAGTACATGTAATGTTTCACAAGCCAAGTTCTTGGTGAGCCTCTTTGGTGGAGGGTATTGGGTGCAATCTAAGAAGGGCGGGTTGGCCTTGTGTTGGAAGTCAAGGCCTTTGACTGTGGCTTCAATATGGGTACCAAAGAGTGACAAGGTCAAATAG 1455 0.3904 MNAMDYEHFDYSFGPPHMNHLHDYDYISENAFSFQTEDFLSSNTILDEMFDLESMEGLLTTKQDYGFMNDYATTVDLETEMCHGFTLNIEENVQVPMEQGDSSLKGIQAELMEETSLVDLLLTGAEAVEAQNWTLALDIIEKLNNASSLENGDGLLNRLASFFTQGLYYKSKNVYEFPQHGSFSTHTNALCVFQILQELSPYVKFSHFTANQAILEATEGVDHVHIIDFDIMEGIQWPPLMVDLAMRKIATSLRVTAITVDQRSVASIQQTGRRLKEFAASINFEFMFDQIVMAREEDFQGVELGETVIVNCMIHQWMPNRSFSLVKIFLDGVSKLSPRLVVLVEEELFNFSRLKSMSFVEFFCEALHHYTALCDSLASGLRGRHKMELRLIENEVLGLRILDSVRQFPCERKERKVWEEVLYSMKGFKCVPMSTCNVSQAKFLVSLFGGGYWVQSKKGGLALCWKSRPLTVASIWVPKSDKVK 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02236 484 Pfam GRAS domain family 117 476 IPR005202 -
Cca09g02236 484 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 478 IPR005202 -
Cca09g02236 484 PANTHER OS12G0162700 PROTEIN 7 478 - -
Cca09g02236 484 ProSiteProfiles GRAS family profile. 108 477 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02236 Cca-Chr9 47570158 47571768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02236 191 476 GRAS Transcription Factor Family AT1G55580 37.179 1.71e-46 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca09g02236 GRAS 2.9e-81 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02236 - - gmx:100804613 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02236 09 47570158 47571768 Cca09g02236 09 47570158 47571768 ECH