Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca09g02227 | ATGGATTCGGAGGATTTCCGATCCATATTGGAGAGTGCCGGCGCCGACGTTTGGACGCTGATCGACACCGCCATCGCGGTCGCCTCCGTCGATCACGGCGACGAGTTGAAGCGCCGGAGAGACGGAATCGTCGAGCGCCTTTACGTCGCGAGTTCAGCGCCGCCGCGGTGTCGAAATTGCGAGCCGGACGACGGTGAAATCAAGACGCGGAACAGTCCCTCCGCGGCGGAGGCAAAGGATCCTCACGGAGGCTTGGTCGACGACGAGCAGATGAAGATTCTAGAGATTAAAGAGCAACTCGAAGATCCTCACCAGTCTGAAGATTCATTGGTGGAGTTGTTACAGAATCTAGCAGATATGGATATTACATTCCAAGCGTTAGGAAAAACTGACATTGGTAGGCATGTGAATCGTTTGCGGAAGCATTCGTCCAATGATGTTAAGAGATTGGTGAAGTTACTCGTCAGGAAGTGGAAGGAAATTGTAGACGAATGGGTGAAGTCGAGGACAACGGGAGAAGCGGGTACTGCTGTCATGGCTGATGGGGACTCACCTCAACAGAAAAGCCTACAAAATGGGCATCGTCAGGTTGAAGAAATCTTTTTGATCATTATTCAGAAAGCCAAGCTTTCAAGCTTTCTGATATTCTATTCCTTTTTGCAGATTCTTGATTTTGCATATTCGCCTAATCCACACAATGGGAGTTTTGGGTCAGAGATCAACAATATTGAACCACAACAACTAAAACCAAAAGCAATTCCTCGCAAAGAAGCTCCCCCAAAACCACCGCCATCAGTCACTAATCCTGCTCCTGCTCCTCAAAATAGACAGAGCGTTATCAATATTGACTTGGATAGATTTGATTCAGCTAGAAAACGACTTCAAGAGAACTACAAAGAGGCTGCAAATGCCAAAAAGCAAAGAACGATTCAGGTGATGGACCTCCATGATTTACCAAAACCCAAGAATGCCTTCTTTGGAAAAAACAAAGGCGGCAACGGTCAGGGAAGGCACTAG | 1017 | 0.4769 | MDSEDFRSILESAGADVWTLIDTAIAVASVDHGDELKRRRDGIVERLYVASSAPPRCRNCEPDDGEIKTRNSPSAAEAKDPHGGLVDDEQMKILEIKEQLEDPHQSEDSLVELLQNLADMDITFQALGKTDIGRHVNRLRKHSSNDVKRLVKLLVRKWKEIVDEWVKSRTTGEAGTAVMADGDSPQQKSLQNGHRQVEEIFLIIIQKAKLSSFLIFYSFLQILDFAYSPNPHNGSFGSEINNIEPQQLKPKAIPRKEAPPKPPPSVTNPAPAPQNRQSVINIDLDRFDSARKRLQENYKEAANAKKQRTIQVMDLHDLPKPKNAFFGKNKGGNGQGRH | 338 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca09g02227 | 338 | Gene3D | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 86 | 175 | IPR035441 | - | |
Cca09g02227 | 338 | PANTHER | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED | 222 | 338 | IPR044790 | - | |
Cca09g02227 | 338 | PANTHER | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED | 1 | 200 | IPR044790 | - | |
Cca09g02227 | 338 | SUPERFAMILY | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 93 | 171 | IPR035441 | - | |
Cca09g02227 | 338 | MobiDBLite | consensus disorder prediction | 253 | 279 | - | - | |
Cca09g02227 | 338 | CDD | TFIIS_I | 93 | 163 | - | - | |
Cca09g02227 | 338 | Coils | Coil | 284 | 311 | - | - | |
Cca09g02227 | 338 | SMART | TFS2_5 | 93 | 164 | IPR003617 | GO:0005634 | |
Cca09g02227 | 338 | MobiDBLite | consensus disorder prediction | 316 | 338 | - | - | |
Cca09g02227 | 338 | Pfam | TFIIS helical bundle-like domain | 113 | 162 | IPR017923 | - | |
Cca09g02227 | 338 | ProSiteProfiles | TFIIS N-terminal domain profile. | 88 | 165 | IPR017923 | - | |
Cca09g02227 | 338 | MobiDBLite | consensus disorder prediction | 59 | 87 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca09g02227 | Cca-Chr9 | 47471556 | 47474111 | Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | IWS1 | Cca09g02227 | Med26 | 5.8e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca09g02227 | - | - | ccaj:109799574 | 590.112 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca09g02227 | 09 | 47471556 | 47474111 | Cca09g02227 | 09 | 47471556 | 47474111 | ECH | |
Cca09g02227 | 09 | 47471556 | 47474111 | Cca03g00135 | 03 | 1954127 | 1957320 | PCT |