Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02227 ATGGATTCGGAGGATTTCCGATCCATATTGGAGAGTGCCGGCGCCGACGTTTGGACGCTGATCGACACCGCCATCGCGGTCGCCTCCGTCGATCACGGCGACGAGTTGAAGCGCCGGAGAGACGGAATCGTCGAGCGCCTTTACGTCGCGAGTTCAGCGCCGCCGCGGTGTCGAAATTGCGAGCCGGACGACGGTGAAATCAAGACGCGGAACAGTCCCTCCGCGGCGGAGGCAAAGGATCCTCACGGAGGCTTGGTCGACGACGAGCAGATGAAGATTCTAGAGATTAAAGAGCAACTCGAAGATCCTCACCAGTCTGAAGATTCATTGGTGGAGTTGTTACAGAATCTAGCAGATATGGATATTACATTCCAAGCGTTAGGAAAAACTGACATTGGTAGGCATGTGAATCGTTTGCGGAAGCATTCGTCCAATGATGTTAAGAGATTGGTGAAGTTACTCGTCAGGAAGTGGAAGGAAATTGTAGACGAATGGGTGAAGTCGAGGACAACGGGAGAAGCGGGTACTGCTGTCATGGCTGATGGGGACTCACCTCAACAGAAAAGCCTACAAAATGGGCATCGTCAGGTTGAAGAAATCTTTTTGATCATTATTCAGAAAGCCAAGCTTTCAAGCTTTCTGATATTCTATTCCTTTTTGCAGATTCTTGATTTTGCATATTCGCCTAATCCACACAATGGGAGTTTTGGGTCAGAGATCAACAATATTGAACCACAACAACTAAAACCAAAAGCAATTCCTCGCAAAGAAGCTCCCCCAAAACCACCGCCATCAGTCACTAATCCTGCTCCTGCTCCTCAAAATAGACAGAGCGTTATCAATATTGACTTGGATAGATTTGATTCAGCTAGAAAACGACTTCAAGAGAACTACAAAGAGGCTGCAAATGCCAAAAAGCAAAGAACGATTCAGGTGATGGACCTCCATGATTTACCAAAACCCAAGAATGCCTTCTTTGGAAAAAACAAAGGCGGCAACGGTCAGGGAAGGCACTAG 1017 0.4769 MDSEDFRSILESAGADVWTLIDTAIAVASVDHGDELKRRRDGIVERLYVASSAPPRCRNCEPDDGEIKTRNSPSAAEAKDPHGGLVDDEQMKILEIKEQLEDPHQSEDSLVELLQNLADMDITFQALGKTDIGRHVNRLRKHSSNDVKRLVKLLVRKWKEIVDEWVKSRTTGEAGTAVMADGDSPQQKSLQNGHRQVEEIFLIIIQKAKLSSFLIFYSFLQILDFAYSPNPHNGSFGSEINNIEPQQLKPKAIPRKEAPPKPPPSVTNPAPAPQNRQSVINIDLDRFDSARKRLQENYKEAANAKKQRTIQVMDLHDLPKPKNAFFGKNKGGNGQGRH 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02227 338 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 86 175 IPR035441 -
Cca09g02227 338 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 222 338 IPR044790 -
Cca09g02227 338 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 200 IPR044790 -
Cca09g02227 338 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 93 171 IPR035441 -
Cca09g02227 338 MobiDBLite consensus disorder prediction 253 279 - -
Cca09g02227 338 CDD TFIIS_I 93 163 - -
Cca09g02227 338 Coils Coil 284 311 - -
Cca09g02227 338 SMART TFS2_5 93 164 IPR003617 GO:0005634
Cca09g02227 338 MobiDBLite consensus disorder prediction 316 338 - -
Cca09g02227 338 Pfam TFIIS helical bundle-like domain 113 162 IPR017923 -
Cca09g02227 338 ProSiteProfiles TFIIS N-terminal domain profile. 88 165 IPR017923 -
Cca09g02227 338 MobiDBLite consensus disorder prediction 59 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02227 Cca-Chr9 47471556 47474111 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Cca09g02227 Med26 5.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02227 - - ccaj:109799574 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02227 09 47471556 47474111 Cca09g02227 09 47471556 47474111 ECH
Cca09g02227 09 47471556 47474111 Cca03g00135 03 1954127 1957320 PCT