Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02220 ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGACGTTGATTCCTCCAAGAAGAAGAAGGAGATCACCGACAAGACCGAGAGGACTTACCGGAGGCGcgacgtcgacgaagatctcgacgccgacgacagaaggaccaagaggtcaagggccgacgacgagaacggcgCTTCCAAGAAGgatcgcgacagagaccgagaccgtgaccgtgaccgcgaccgcgaccgTTCCTCCGGCCGTCACAGgagcgagagggagagagacggagagaggaaagagaaggataaggatagagagaggagggataaggataaggacagggatagggatagggataggagtaaccgggatagggaaaaggagcgcgagagaagagagaaggatagggagagggagagggagagggacgagaaagagagatccagaaggagcaggagCCGCTCCGTGAGAGATAGAGAGCGAGATTTCGAAATGCGCGATGGCCGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCTTTAAAAGCAACTGAAAGAGATGTCTACGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCTATTGCTCTCTCTGGTCAACTTCTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCGGCTGGTGTAGCTGGGCCCTATGGAGCTGTTGATAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACCGAGAGTCAGCTGCGGGAGATTTTTGAGCCATTTGGTCCGGTTGAGGTTGTCCAACTGCCTCTTGACCTGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTACCCATCTTGAACATGCCAAGGCAGCTCAGAGTTTGAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATGTGTAACAGATCATGTTGGAAGCCAAGATACAACTGCAAAATCTGCAGACTTGGACGATGATGAAGGTGGACTGACATTAAATGCACACTCAAGAGCATTGCTTATGCAAAGGCTGGCCGGCACTGACATTCCTGCAAGCATAGGTATGCCTGGTTTGAATGGGTCAGTTCCAGCTCAGCAGGCTATTAGCTTGCCTCTTGGTGCATCAGTCCTACCAACACAAGTTATGCCTACCCCAGTGGTAGAACCTGTAGGAAGCCCCAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCGAGCACCGAGACAGAGCCAGATTTTGATATAGACATTAAAGAGGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTTTGTTGACAAGAAAAGTGCGGGTTTTGTTTATTTGCAGTTTGAAACAGTGGAAGCAGCGAGTGCTGCTCAACGTGCAATGCACATGAGATGGTTTGCGCGCAGGTTAATTTCAGCCATCTTCATGCAACCACAGTTATACGAAGCCAAGTTTAAAGGGGAGGTTTAA 1641 0.3772 MDFDEYEYLEKTVEEDVDSSKKKKEITDKTERTYRRRDVDEDLDADDRRTKRSRADDENGASKKDRDRDRDRDRDRDRDRSSGRHRSERERDGERKEKDKDRERRDKDKDRDRDRDRSNRDREKERERREKDRERERERDEKERSRRSRSRSVRDRERDFEMRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGTDIPASIGMPGLNGSVPAQQAISLPLGASVLPTQVMPTPVVEPVGSPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLQFETVEAASAAQRAMHMRWFARRLISAIFMQPQLYEAKFKGEV 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02220 546 CDD RRM3_RBM39_like 451 533 - -
Cca09g02220 546 PANTHER CC1-LIKE SPLICING FACTOR 1 546 - -
Cca09g02220 546 SUPERFAMILY RNA-binding domain, RBD 448 533 IPR035979 GO:0003676
Cca09g02220 546 CDD RRM2_RBM23_RBM39 290 362 - -
Cca09g02220 546 SMART rrm1_1 187 259 IPR000504 GO:0003723
Cca09g02220 546 SMART rrm1_1 289 362 IPR000504 GO:0003723
Cca09g02220 546 SMART rrm1_1 453 530 IPR000504 GO:0003723
Cca09g02220 546 Coils Coil 115 148 - -
Cca09g02220 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 366 IPR000504 GO:0003723
Cca09g02220 546 SUPERFAMILY RNA-binding domain, RBD 287 366 IPR035979 GO:0003676
Cca09g02220 546 Gene3D - 179 273 IPR012677 -
Cca09g02220 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 263 IPR000504 GO:0003723
Cca09g02220 546 MobiDBLite consensus disorder prediction 13 159 - -
Cca09g02220 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 475 528 IPR000504 GO:0003723
Cca09g02220 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 360 IPR000504 GO:0003723
Cca09g02220 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 255 IPR000504 GO:0003723
Cca09g02220 546 TIGRFAM SF-CC1: splicing factor, CC1-like family 65 542 IPR006509 GO:0003723|GO:0005634|GO:0006397
Cca09g02220 546 Gene3D - 448 545 IPR012677 -
Cca09g02220 546 MobiDBLite consensus disorder prediction 1 159 - -
Cca09g02220 546 CDD RRM1_RBM39_like 187 259 - -
Cca09g02220 546 Gene3D - 284 380 IPR012677 -
Cca09g02220 546 SUPERFAMILY RNA-binding domain, RBD 179 272 IPR035979 GO:0003676
Cca09g02220 546 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 546 - -
Cca09g02220 546 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 381 470 IPR029123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02220 Cca-Chr9 47404958 47412029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02220 273 361 Eukaryotic Initiation Factors Gene Family AT4G34110 41.111 4.82e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02220 K13091 - gmx:100793461 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02220 09 47404958 47412029 Cca03g00129 03 1833493 1840568 PCT