Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02218 ATGGCGAATCACGGTGGAAAGGGTAACGAGAAGCTTTTGTCAGTGCCATTCATGTTTTCGGGTCTGAACCGAGAGAGGGAGATGTCAGCCATGATCTCTGCTTTGACCCATGTCGTGTGTGGAGAGGATCACAGTATCaataataataataataataataacaacaataGTGAAGTTTTTGTGACATCAAATATGGCTTGTGCTTCTGTGGCAGTGGCACCTTCTTCATCTCATGGTGGCAACTCTGTTCTGAAGAGAAGGAGGGAAGAGGATAATACAAATACAAATACAAATACATCATTCGGTGAATTCTCACGTGAAGCCTCGCAGCCTGCTATTTCAACAATTACAGAGAGTTCAAGTAGGAATAGGgaatacgaatacgaatacgaatacgaatacAAGTCAGAAGAGAAGGGTAGAAGAGAGGAGCAAGAGAGGAGGAAATACAGAGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCAGAGATAAGGGACCCGATAAAGGCGAGCAGAGTGTGGTTAGGAACATTCCAAACAGCAGAGGCTGCAGCCAGAGCTTATGATGAAGCCTCCTTGCGTTTCAGAGGCAACAAAGCCAAACTCAACTTTCCTGAAAATGTTAGGCTCAGACAACCCAACCCACCAACCCTCTATCATCACATTCCCATGTCTTCTCATAATGTTCAATCTTCACCATTGCTTTCTTCTTCTTCAACTATGACTTCTCCACAGCCACCACCTGTTCCTTCCATTCATTTACCCTCTCATTCCATGTGA 783 0.4304 MANHGGKGNEKLLSVPFMFSGLNREREMSAMISALTHVVCGEDHSINNNNNNNNNNSEVFVTSNMACASVAVAPSSSHGGNSVLKRRREEDNTNTNTNTSFGEFSREASQPAISTITESSSRNREYEYEYEYEYKSEEKGRREEQERRKYRGVRQRPWGKWAAEIRDPIKASRVWLGTFQTAEAAARAYDEASLRFRGNKAKLNFPENVRLRQPNPPTLYHHIPMSSHNVQSSPLLSSSSTMTSPQPPPVPSIHLPSHSM 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02218 260 MobiDBLite consensus disorder prediction 72 120 - -
Cca09g02218 260 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Cca09g02218 260 PRINTS Ethylene responsive element binding protein signature 172 188 IPR001471 GO:0003700|GO:0006355
Cca09g02218 260 SUPERFAMILY DNA-binding domain 149 207 IPR016177 GO:0003677
Cca09g02218 260 PANTHER DNA-BINDING DOMAIN 37 228 IPR044808 GO:0003700|GO:0009873
Cca09g02218 260 Pfam AP2 domain 149 198 IPR001471 GO:0003700|GO:0006355
Cca09g02218 260 SMART rav1_2 149 212 IPR001471 GO:0003700|GO:0006355
Cca09g02218 260 MobiDBLite consensus disorder prediction 224 243 - -
Cca09g02218 260 MobiDBLite consensus disorder prediction 94 120 - -
Cca09g02218 260 MobiDBLite consensus disorder prediction 224 260 - -
Cca09g02218 260 PANTHER DNA-BINDING DOMAIN PROTEIN 37 228 - -
Cca09g02218 260 CDD AP2 149 208 IPR001471 GO:0003700|GO:0006355
Cca09g02218 260 Gene3D AP2/ERF domain 148 208 IPR036955 GO:0003700|GO:0006355
Cca09g02218 260 ProSiteProfiles AP2/ERF domain profile. 149 206 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02218 Cca-Chr9 47381353 47382884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02218 147 211 AP2-EREBP Transcription Factor Family AT5G61890 81.538 5.41e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca09g02218 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02218 - - ccaj:109799559 413.69