Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02212 ATGGGATGCATTAACACCAAATTGACTCCTCCTCGGAACCAAAACCACAACACAGAGAGATTGAAACCAAACAAAGACCATGCAAACACTGCTTCTCCACCCACTCACGTGGAAGTGAGATTAGAAGAGGATATTAATAAGAAAGTGTCGAGTGAGAAAGAAAATAGAGATAGTACTAGTAAGGTAGTAAAGGGTGTTCCTAGAAATGATGACAAAAGTGAAGTTGGAAATGTTTCAGAGAGATCTGAGGAGAAGAAGAATATTGCACGCAATGAATTTGTGGAGGGGTGGCCAAAATGGCTCGTTGATAATATTCCACCAAATGTTTTGGCTACTTTGGTCCCCAAGAGTGCTGATTCATATGAAAAACTCGGAAAGGTGGGACGAGGTACATACAGTAATGTATACAAAGCCCGAGATAAGGATACTGGAAAGATTGTTGCTTTGAAGAAGGTAAAGTTTGACACATCGGATCCTGAAAGCATAAAGTTTATGGCAAGAGAGATCGTGATACTGCAGACACTGGATCATCCCAATGTCATCAAACTGGAAGGACTAGCGACATCAAGGATGCAGTATAGTCTTTATCTTGTTTTTGATCACATGAAATCTGATCTTACAAGAATCATCTCTCGCCCTGGGGAGAAACTCACTGAACCACAGATCAAGTGTTACATGCAGCAGCTGCTTTTGGGGCTCCATCATTGTCATGAGAGAGGAGTTATGCATAGGGATATTAAACCATCAAACTTGCTAGTGGATAAAAAAGGGGTGCTAAAAATTGCAGATTTTGGGCTGGCAAATTCTTTTGCTATTAAACCTGAAGGGCCTTTTACAAATCGAGTGGTGACACTTTGGTATAGAGCTCCTGAACTTCTATTAGGTTCAACACATTATGGATATTCAATTGATCTATGGAGTGCAGGATGCTTGTTGGCTGAGATGTTTCATGGAAGACCAATTATGCCTGGGAGGACTGAGGTTGAACAGATTCACATGATCTTCAAACTTTGTGGTTCACCTTCAGCGGATTACTGGATGAAAACGAAGCTAATGACAAGCTTCCGTCCGCCACCACATTATAAAGCAAATTATGAAGAAAATTTTAAGGACTTTCCTTCCTCTGCTTGTGCTCTCTTGACTACACTTCTTCATCTGCACTCTGATTCTCGTGGCACCGCTGCCTCTGCTCTTGAAAGTGAATTTTTCAAATCAAGTCCATTAGCATGCGACCCTTCAGCGTTGCCAGTAATCTACAACGATGAGGATGAACGCTCACAAACAAAGAGACGCAAAAGGCGCAAGGGTCTGAAAAATAAAGGGCAAGTATTTCAAACAAGTGCATCCAATGTGAGCCACTCACGAAAGAACCAAACTGCAGAACAACGATGGAGAGATTCAGAATCATCAAAGGAGAAGAGGGTGTTACAAAACATGAAAGGAGAAGAAACAAGGAATAGTGGAAGTAGCAGCGCGTGGTCATTCTTTATGAACGAGAGGAGCATGAGCATGAATGCATCTTTATCACCACTTTTTCTCTCTAGTGTGAGAAAATCCCCCAGAACTGAGGGCCATCCCAATGCTCTTAAGAACATAAAAAACTATGCCCTCTTACAAGCCTCTATAATTGATGTCATCAATCGCAATGAAAGCAGTGAAATTGGTCCCTTGCGTAAGTCCTTTTCTGCGTTGGATTTTCGGCTTGATCAAGAGAAGCTATCAAGCTTCTACGGACCAAATAACAAGTTGGGTAACGAAATGTGA 1764 0.4167 MGCINTKLTPPRNQNHNTERLKPNKDHANTASPPTHVEVRLEEDINKKVSSEKENRDSTSKVVKGVPRNDDKSEVGNVSERSEEKKNIARNEFVEGWPKWLVDNIPPNVLATLVPKSADSYEKLGKVGRGTYSNVYKARDKDTGKIVALKKVKFDTSDPESIKFMAREIVILQTLDHPNVIKLEGLATSRMQYSLYLVFDHMKSDLTRIISRPGEKLTEPQIKCYMQQLLLGLHHCHERGVMHRDIKPSNLLVDKKGVLKIADFGLANSFAIKPEGPFTNRVVTLWYRAPELLLGSTHYGYSIDLWSAGCLLAEMFHGRPIMPGRTEVEQIHMIFKLCGSPSADYWMKTKLMTSFRPPPHYKANYEENFKDFPSSACALLTTLLHLHSDSRGTAASALESEFFKSSPLACDPSALPVIYNDEDERSQTKRRKRRKGLKNKGQVFQTSASNVSHSRKNQTAEQRWRDSESSKEKRVLQNMKGEETRNSGSSSAWSFFMNERSMSMNASLSPLFLSSVRKSPRTEGHPNALKNIKNYALLQASIIDVINRNESSEIGPLRKSFSALDFRLDQEKLSSFYGPNNKLGNEM 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02212 587 PANTHER CYCLIN-DEPENDENT KINASE 71 540 - -
Cca09g02212 587 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Cca09g02212 587 Gene3D Transferase(Phosphotransferase) domain 1 204 443 - -
Cca09g02212 587 MobiDBLite consensus disorder prediction 1 17 - -
Cca09g02212 587 MobiDBLite consensus disorder prediction 37 83 - -
Cca09g02212 587 SMART serkin_6 121 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02212 587 Pfam Protein kinase domain 121 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02212 587 MobiDBLite consensus disorder prediction 458 480 - -
Cca09g02212 587 MobiDBLite consensus disorder prediction 1 83 - -
Cca09g02212 587 MobiDBLite consensus disorder prediction 419 490 - -
Cca09g02212 587 MobiDBLite consensus disorder prediction 440 457 - -
Cca09g02212 587 Gene3D Phosphorylase Kinase; domain 1 110 203 - -
Cca09g02212 587 PANTHER CELL DIVISION PROTEIN KINASE 71 540 - -
Cca09g02212 587 ProSiteProfiles Protein kinase domain profile. 121 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02212 587 SUPERFAMILY Protein kinase-like (PK-like) 115 409 IPR011009 -
Cca09g02212 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02212 Cca-Chr9 47328184 47332275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02212 106 435 Core Cell Cycle Gene Families AT5G10270 44.828 2.97e-97 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca09g02212 Pkinase 1.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02212 K08819 - gmx:102667260 884.404