Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02205 ATGTCAACAACTTCTCATTCCATTGTTCATCACAGCTTATTCGAGGAGCAGGATCAGATTCCTTCACAGATGGGTTTCTTCCCCTTTCCAACAAACCTTACCTTCCCTCCTTTGGGTTGCCATCAATCCTCTTTGAAAGCCTTCAGCTCCGTAGCACCTGCTTCACTTGCCATATCTCAACAAGACTCTGCATCAAATCTCACAGAAACCCTATTCTCAACCACTGCTCAAAAGTCAAGAGAAGACCTCAATTCTACCACCTTTGGAGGAGCTCAATTCCTATCCTTGCAAAGATCGAGTGTAAATCCATGGGCACCGGGAGAAGTGACTGATTGCTTCAGCACAAAAAGAAGTGGATTTGATGATCATCATCTCGGAATTTCAGCCATGAAGATGAAGAAAATGAAGGCAAGAAGGAAGgtgagagagcctaggttttgcttcaagaccatgagcgatgtggatgtattggacgatggctacaagtggaggaagtacggacagaaagttgttaagaacacgcagcaccccagaagctattaccgttgcacacaagataattgtcgagtgaagaaacgcgtggaacgcttagccgaggatccaaggatggtgataaccacatatgaagggagacatgctcactcTCCATCAAGTGATCTTGAAGACTCTCAAACCCTATCTCAACTTGGCAACTTCTTATGGTAG 705 0.2979 MSTTSHSIVHHSLFEEQDQIPSQMGFFPFPTNLTFPPLGCHQSSLKAFSSVAPASLAISQQDSASNLTETLFSTTAQKSREDLNSTTFGGAQFLSLQRSSVNPWAPGEVTDCFSTKRSGFDDHHLGISAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSSDLEDSQTLSQLGNFLW 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02205 234 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 49 223 IPR044810 GO:0003700
Cca09g02205 234 ProSiteProfiles WRKY domain profile. 152 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g02205 234 SMART WRKY_cls 157 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g02205 234 Pfam WRKY DNA -binding domain 158 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g02205 234 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 49 223 - -
Cca09g02205 234 Gene3D WRKY domain 144 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g02205 234 SUPERFAMILY WRKY DNA-binding domain 149 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02205 Cca-Chr9 47227262 47229971 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02205 42 234 WRKY Transcription Factor Family AT4G39410 48.780 2.08e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca09g02205 WRKY 6.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02205 - - pvu:PHAVU_002G266400g 419.468