Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02196 ATGCTCGATGATTACGTTGATCATCATCAAGAGTCTAGGTCATCACAAAGCACCACCGAGTCATCGGAAAAAGCAACCTTCAGTAGTGATGCCACTCATCACGGTGCAACCTCTaagaacaacaacaacaacaacaTGCAATTAAAATGCAAAAATGGGAACAAAGCAGGAGTGGGTCCAAGGATCGCGTTTAGAACCAAGTCGGAGCTCGAGATTATGGATGATGGATACAAGTGGAGGAAGTATGGCAAGAAGTCAGTCAAGAGCAATTGCAACCTAAGGAACTACTACAAATGTTCAAGTGGAGGATGCATTGTGAAGAAAAGAGTGGAAAGGGATAGAGATGACTCGAGCTATGTGATAACAACATATGAAGGTGTGCACAATCATGAGAGTCCATTTACCACCTACTACAGCCCCATTTCCTTCATACATTCTGATGCTTTTACATCCACCCAATGA 462 0.4134 MLDDYVDHHQESRSSQSTTESSEKATFSSDATHHGATSKNNNNNNMQLKCKNGNKAGVGPRIAFRTKSELEIMDDGYKWRKYGKKSVKSNCNLRNYYKCSSGGCIVKKRVERDRDDSSYVITTYEGVHNHESPFTTYYSPISFIHSDAFTSTQ 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02196 153 SMART WRKY_cls 73 132 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g02196 153 MobiDBLite consensus disorder prediction 15 51 - -
Cca09g02196 153 SUPERFAMILY WRKY DNA-binding domain 65 133 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g02196 153 Gene3D WRKY domain 58 134 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g02196 153 ProSiteProfiles WRKY domain profile. 68 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g02196 153 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 4 138 - -
Cca09g02196 153 MobiDBLite consensus disorder prediction 1 55 - -
Cca09g02196 153 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 4 138 IPR044810 GO:0003700
Cca09g02196 153 Pfam WRKY DNA -binding domain 74 131 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02196 Cca-Chr9 47110554 47112129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02196 10 141 WRKY Transcription Factor Family AT5G64810 54.545 3.34e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca09g02196 WRKY 1.5e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02196 - - gmx:100500248 233.032