Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02192 ATGGCGCCGAAGCAGATAACTCATAAGGTTAGCAGAAACCCTGAATTGATAAGGGGAATCGGAAAGTACTCGAGGTCGCAGATGTACCACAAGAGAGGCATCTGGGCTATCAAAGCTAAAAACGGCGGCGTTTTCCCTCGCCACGATCCTAAACCTAAACCCGAAGCTCCCGCTGAAAAACCACCCAAATTTTACCCTGCCGATGATGTCAAGAAGCCACTTGTCAACAAGCACAAACCCAAACCCACTAAGCTCAGGGCTAGCATTACACCAGGGACAGTGTTGATTCTTCTTGCTGGTAGATTTAAAGGAAAGAGGGTAGTGTTTTTGAAGCAGCTTCCTTCTGGCTTGCTTCTTGTGACTGGTCCTTTTAAGATTAATGGAGTTCCCTTGAGACGTGTGAATCAATCCTATGTTATTGCCACATCAACTAAAGTAGATGTTTCTGCTGTTAATGTCGACAACTTTGATGACAAATACTTTACAAAGGAAGTCCAAAAGAAGAAAAAGAAGGGAGAAGGCGAGTTCTTTGAGGCAGATAAGGAGGAAAAGAGTGTATTGCCCCAGCAGAAGAAAGATGATCAGAAAACTGTGGACTCTACATTAATTAAAGCCATTGAGAGTGTTCCAGACTTGAAGGCTTATCTCGGTGCTAGGTTTTCCCTAAAGGATGGTGTTAAACCTCATGAACTAGTCTTCTAG 702 0.4373 MAPKQITHKVSRNPELIRGIGKYSRSQMYHKRGIWAIKAKNGGVFPRHDPKPKPEAPAEKPPKFYPADDVKKPLVNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDVSAVNVDNFDDKYFTKEVQKKKKKGEGEFFEADKEEKSVLPQQKKDDQKTVDSTLIKAIESVPDLKAYLGARFSLKDGVKPHELVF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02192 233 Pfam Ribosomal protein L6, N-terminal domain 4 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Cca09g02192 233 SUPERFAMILY Translation proteins SH3-like domain 87 177 IPR008991 -
Cca09g02192 233 MobiDBLite consensus disorder prediction 44 76 - -
Cca09g02192 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Cca09g02192 233 CDD KOW_RPL6 81 233 IPR041997 -
Cca09g02192 233 ProSitePatterns Ribosomal protein L6e signature. 127 145 IPR000915 GO:0003735|GO:0005840|GO:0006412
Cca09g02192 233 MobiDBLite consensus disorder prediction 44 84 - -
Cca09g02192 233 Gene3D - 87 172 IPR014722 -
Cca09g02192 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Cca09g02192 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02192 Cca-Chr9 47077217 47079423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02192 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 80.258 3.09e-121 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02192 K02934 - gmx:100499766 409.453