Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02185 ATGACAGGGAAGAGAAACCAAAACCAAAACCAATCGAGTCCTGTGGGAAGTCCAACATCTGGAGGCAACATCTCAGACAGCTCCTCCTCAAAGGAACAAGACAGGTTCCTCCCAATAGCCAATGTTAGCCGCATCATGAAAAGGGCACTCCCAGCCAACGCCAAGATCTCAAAAGAAGCCAAGGAAACGGTTCAGGAGTGTGTCTCTGAGTTCATAAGCTTCATCACTGGGGAAGCCTCAGACAAGTGCCAGAGAGAGAAGAGAAAAACCATCAACGGTGATGATCTTCTTTGGGCGATGACAACCCTAGGCTTTGAAAACTACGTTGGACCCTTGAAGCACTACCTCAACAGCTACAGGGAAACCGAGGGGGAGAAGAGTTCTGTGGCAAAACAAGAAGAACAGTACTCTCCAACTCACCAACAAAATGATCATGGGGTCGTGCATGAAATCAACAAGTTGTTGCCTCATTCTTCTGTCACAACAAACAAACCAGACTTCAACACTTTCGGTGGTGGCTTCTATTCTGTGGGGCCACAAGTAAGTGCTCAGAGTTATAGAGAGAGTTCCATGAATAGGGTCATTGCTCAAAGTGCTGCCAATGGTGGTGATCCTGATGATGCAAGTGCTAATAGAATGGTGCCACCCAACCTACGTTATAGGGTTGAATGGTAG 675 0.4711 MTGKRNQNQNQSSPVGSPTSGGNISDSSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKHYLNSYRETEGEKSSVAKQEEQYSPTHQQNDHGVVHEINKLLPHSSVTTNKPDFNTFGGGFYSVGPQVSAQSYRESSMNRVIAQSAANGGDPDDASANRMVPPNLRYRVEW 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02185 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 194 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca09g02185 224 MobiDBLite consensus disorder prediction 1 36 - -
Cca09g02185 224 PRINTS CCAAT-binding transcription factor subunit A signature 64 82 - -
Cca09g02185 224 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Cca09g02185 224 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Cca09g02185 224 MobiDBLite consensus disorder prediction 1 37 - -
Cca09g02185 224 ProSitePatterns NF-YB/HAP3 subunit signature. 67 83 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cca09g02185 224 SUPERFAMILY Histone-fold 33 140 IPR009072 GO:0046982
Cca09g02185 224 Gene3D Histone, subunit A 23 151 IPR009072 GO:0046982
Cca09g02185 224 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 100 IPR003958 -
Cca09g02185 224 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 10 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02185 Cca-Chr9 47023414 47024844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02185 16 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 80.870 5.87e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca09g02185 CBFD_NFYB_HMF 1.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02185 K08065 - gmx:100810059 320.087