Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02173 ATGGATTCTCCATCCTCACAGTTTATTTCCTCAAGAAGGATGGGTGTGTATGATCCTATCCACCAAATTAGCATGTGGGAAGAAAACTTCAAAAGTAATGATAATAATTTAAGTGTATCTACATCCATAATTGAGGAGGGGGATATGAAGTTAGCTAATCAGATTCAGGTGCAATCAGAGGATGCTTCTCATGGAATATTTGGAACATCTGTGAATTACGACCAAGGTGCTAACAAACTTACTGATAAGACACAAAGACGTCTTGCACAAAATCGTGAGGCTGCTCGCAAGAGTCGTTTGAAGAAAAAGGCATACGTGCAGCAATTAGAAGCATGTCGTTTGAAGCTGATGCAGTTAGAGCTAGAGGTAGACCATGCAAAACAACAGGGATTGTATGTTGGTGACGGATTGGGTTCTAATAATTTTGGTTTTGCTGGCTCTGTAAATCCAGGAATAACAATTTTCAAGATGGAGCACGAGCACTGGGTGGAGGAGCAAAATAGACAAATTTTGGAACTGAGAACTGCTTTAAGTTCTCATATGGATGACATTCAGTTCGGGACACTAGTACAGGGCATAATGAACCACTACTCCAAACTCTTTAGCTTGAAATCTGCTGCTGCAAAATCAGATGTTTTCTATGTTATGTCTGGTATGTGGAAGACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTAAAGGTTCTGGTCCCTCTGATTGAACCTTTGACAGAGCAACAAAGGTTTGATGCATATGGCCTTGAAAAATCATGCCAGCAAGCAGAAGATGCCCTTTCACAAGGTATGGAAAAACTTCAGCAAATGCTTGCTGACAGTGTAGGGCCAGGACAACTAGTTGAAGGAACTTACATTCCACAAATGGATACTGCAATGGAGAGACTGGAAGCTCTGGTGAGCTTTGTGAACCAGGCTGATCATCTACGACAAGAAACCTTGCGACAAATGTCTCGAATACTTACCGTACGTCAGAGTGGTCGATTTCTGCTTGCTTTGATGGAATATTTTCAACGCTTACGGGCTTTGAGCAAACTTTGGGTTAATCGTCCTCGAGAACTT 1098 0.418 MDSPSSQFISSRRMGVYDPIHQISMWEENFKSNDNNLSVSTSIIEEGDMKLANQIQVQSEDASHGIFGTSVNYDQGANKLTDKTQRRLAQNREAARKSRLKKKAYVQQLEACRLKLMQLELEVDHAKQQGLYVGDGLGSNNFGFAGSVNPGITIFKMEHEHWVEEQNRQILELRTALSSHMDDIQFGTLVQGIMNHYSKLFSLKSAAAKSDVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLVPLIEPLTEQQRFDAYGLEKSCQQAEDALSQGMEKLQQMLADSVGPGQLVEGTYIPQMDTAMERLEALVSFVNQADHLRQETLRQMSRILTVRQSGRFLLALMEYFQRLRALSKLWVNRPREL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02173 366 PANTHER TRANSCRIPTION FACTOR TGA9 1 365 - -
Cca09g02173 366 Pfam Seed dormancy control 170 244 IPR025422 GO:0006351|GO:0043565
Cca09g02173 366 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700|GO:0006355
Cca09g02173 366 Pfam bZIP transcription factor 82 111 IPR004827 GO:0003700|GO:0006355
Cca09g02173 366 Coils Coil 265 285 - -
Cca09g02173 366 SMART brlzneu 79 139 IPR004827 GO:0003700|GO:0006355
Cca09g02173 366 Coils Coil 102 129 - -
Cca09g02173 366 Gene3D - 82 131 - -
Cca09g02173 366 ProSiteProfiles DOG1 domain profile. 152 362 IPR025422 GO:0006351|GO:0043565
Cca09g02173 366 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 365 - -
Cca09g02173 366 SUPERFAMILY Leucine zipper domain 83 111 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02173 Cca-Chr9 46868085 46878586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02173 1 365 Calmodulin-binding Proteins AT5G65210 63.144 1.34e-169 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca09g02173 DOG1 1.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02173 K14431 - gmx:100780003 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02173 09 46868085 46878586 Cca01g00225 01 2333474 2337493 PCT